PDE model of oxygen diffusion near E. coli cells Version 2
This partial-differential equations model focuses on the oxygen gradients in consideration of the three-dimensional cell and environment.
SEEK ID: https://fairdomhub.org/models/92?version=2
1 item (and an image) are associated with this Model:- FNR_Oxygen_PDE.nb (Mathematica Notebook file - 199 KB)
Organism: Escherichia coli
Model type: Partial differential equations (PDE)
Model format: Mathematica
Execution or visualisation environment: Not specified
Model image: (Click on the image to zoom) (Original)
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Views: 3512 Downloads: 2
Created: 29th Jan 2013 at 10:03
Last updated: 29th Jan 2013 at 10:03
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Version 2 (latest) Created 29th Jan 2013 at 10:03 by David Knies
image added
Related items
Projects: SUMO
Institutions: University of Stuttgart
I recently joined the Institute for System Dynamics as a PhD student. I'm currently working on a dynamic model of nitrate respiration in E. coli.
Projects: SUMO
Institutions: University of Stuttgart
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
"Systems Understanding of Microbial Oxygen responses" (SUMO) investigates how Escherichia coli senses oxygen, or the associated changes in oxidation/reduction balance, via the Fnr and ArcA proteins, how these systems interact with other regulatory systems, and how the redox response of an E. coli population is generated from the responses of single cells. There are five sub-projects to determine system properties and behaviour and three sub-projects to employ different and complementary modelling ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=55
