Compartimented ODE model of oxygen diffusion near E. coli cells Version 3
This ordinary-differential equation model is a spatially lumped model showing the behaviour of oxygen in the three compartments medium, membrane and cytoplasm and its impact on FNR inactivation, hereby showing the effects of different oxygen concentrations, diffusion coefficients and reaction rates. The model was created with the Matlab SimBiology toolbox.
SEEK ID: https://fairdomhub.org/models/91?version=3
1 item (and an image) are associated with this Model:- FNR_Oxygen_ODE.xml (SBML and XML document - 7.74 KB)
Organism: Escherichia coli
Model type: Ordinary differential equations (ODE)
Model format: SBML
Execution or visualisation environment: Not specified
Model image: (Click on the image to zoom) (Original)
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Views: 3582 Downloads: 1
Created: 29th Jan 2013 at 10:08
Last updated: 29th Jan 2013 at 10:08
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Version 3 (latest) Created 29th Jan 2013 at 10:08 by David Knies
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Projects: SUMO
Institutions: University of Stuttgart
I recently joined the Institute for System Dynamics as a PhD student. I'm currently working on a dynamic model of nitrate respiration in E. coli.
Projects: SUMO
Institutions: University of Stuttgart
SysMO is a European transnational funding and research initiative on "Systems Biology of Microorganisms".
The goal pursued by SysMO was to record and describe the dynamic molecular processes going on in unicellular microorganisms in a comprehensive way and to present these processes in the form of computerized mathematical models.
Systems biology will raise biomedical and biotechnological research to a new quality level and contribute markedly to progress in understanding. Pooling European research ...
Projects: BaCell-SysMO, COSMIC, SUMO, KOSMOBAC, SysMO-LAB, PSYSMO, SCaRAB, MOSES, TRANSLUCENT, STREAM, SulfoSys, SysMO DB, SysMO Funders, SilicoTryp, Noisy-Strep
Web page: http://sysmo.net/
"Systems Understanding of Microbial Oxygen responses" (SUMO) investigates how Escherichia coli senses oxygen, or the associated changes in oxidation/reduction balance, via the Fnr and ArcA proteins, how these systems interact with other regulatory systems, and how the redox response of an E. coli population is generated from the responses of single cells. There are five sub-projects to determine system properties and behaviour and three sub-projects to employ different and complementary modelling ...
Programme: SysMO
Public web page: http://www.sysmo.net/index.php?index=55
