Compartimented ODE model of oxygen diffusion near E. coli cells
Version 3

This ordinary-differential equation model is a spatially lumped model showing the behaviour of oxygen in the three compartments medium, membrane and cytoplasm and its impact on FNR inactivation, hereby showing the effects of different oxygen concentrations, diffusion coefficients and reaction rates. The model was created with the Matlab SimBiology toolbox.


1 item (and an image) are associated with this Model:
  • FNR_Oxygen_ODE.xml (SBML and XML document - 7.74 KB)

Organism: Escherichia coli

Model type: Ordinary differential equations (ODE)

Model format: SBML

Execution or visualisation environment: Not specified

Model image: (Click on the image to zoom) (Original)

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Views: 2717   Downloads: 1

Created: 29th Jan 2013 at 11:08

Last updated: 29th Jan 2013 at 11:08

Last used: 25th Jun 2022 at 10:10

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Version History

Version 3 (latest) Created 29th Jan 2013 at 11:08 by David Knies

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