output/quast/Lactococcus/reads_stats/reads_report.tex
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\documentclass[12pt,a4paper]{article}
\begin{document}
\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# total reads & 182073123 \\ \hline
\# left & 91023201 \\ \hline
\# right & 91023201 \\ \hline
\# mapped & 181512657 \\ \hline
Mapped (\%) & 99.69 \\ \hline
\# properly paired & 178951110 \\ \hline
Properly paired (\%) & 98.29 \\ \hline
\# singletons & 475968 \\ \hline
Singletons (\%) & 0.26 \\ \hline
\# misjoint mates & 1923114 \\ \hline
Misjoint mates (\%) & 1.06 \\ \hline
Avg. coverage depth & 10684 \\ \hline
Coverage $\geq$ 1x (\%) & 100.0 \\ \hline
Coverage $\geq$ 5x (\%) & 99.99 \\ \hline
Coverage $\geq$ 10x (\%) & 99.97 \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}

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