output/quast/Enterococcus/reads_stats/reads_report.tex
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\documentclass[12pt,a4paper]{article}
\begin{document}
\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# total reads & 42014317 \\ \hline
\# left & 21002102 \\ \hline
\# right & 21002102 \\ \hline
\# mapped & 41909026 \\ \hline
Mapped (\%) & 99.75 \\ \hline
\# properly paired & 41698938 \\ \hline
Properly paired (\%) & 99.25 \\ \hline
\# singletons & 90173 \\ \hline
Singletons (\%) & 0.21 \\ \hline
\# misjoint mates & 76970 \\ \hline
Misjoint mates (\%) & 0.18 \\ \hline
Avg. coverage depth & 1883 \\ \hline
Coverage $\geq$ 1x (\%) & 100.0 \\ \hline
Coverage $\geq$ 5x (\%) & 99.94 \\ \hline
Coverage $\geq$ 10x (\%) & 99.82 \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}

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