output/quast/Serratia/report.tex

Version 1

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\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# contigs ($\geq$ 0 bp) & 937 \\ \hline
\# contigs ($\geq$ 1000 bp) & 116 \\ \hline
\# contigs ($\geq$ 5000 bp) & 39 \\ \hline
\# contigs ($\geq$ 10000 bp) & 33 \\ \hline
\# contigs ($\geq$ 25000 bp) & 31 \\ \hline
\# contigs ($\geq$ 50000 bp) & 24 \\ \hline
Total length ($\geq$ 0 bp) & 5558245 \\ \hline
Total length ($\geq$ 1000 bp) & 5097133 \\ \hline
Total length ($\geq$ 5000 bp) & 4950764 \\ \hline
Total length ($\geq$ 10000 bp) & 4903760 \\ \hline
Total length ($\geq$ 25000 bp) & 4869458 \\ \hline
Total length ($\geq$ 50000 bp) & 4623497 \\ \hline
\# contigs & 933 \\ \hline
Largest contig & 490052 \\ \hline
Total length & 5557743 \\ \hline
GC (\%) & 59.46 \\ \hline
N50 & 223393 \\ \hline
N75 & 88019 \\ \hline
L50 & 9 \\ \hline
L75 & 18 \\ \hline
\# total reads & 118812031 \\ \hline
\# left & 59370898 \\ \hline
\# right & 59370898 \\ \hline
Mapped (\%) & 99.72 \\ \hline
Properly paired (\%) & 99.07 \\ \hline
Avg. coverage depth & 3188 \\ \hline
Coverage $\geq$ 1x (\%) & 100.0 \\ \hline
\# N's per 100 kbp & 0.00 \\ \hline
Complete BUSCO (\%) & 99.32 \\ \hline
Partial BUSCO (\%) & 0.00 \\ \hline
\# predicted genes (unique) & 5268 \\ \hline
\# predicted genes ($\geq$ 0 bp) & 5024 + 244 part \\ \hline
\# predicted genes ($\geq$ 300 bp) & 4502 + 222 part \\ \hline
\# predicted genes ($\geq$ 1500 bp) & 620 + 0 part \\ \hline
\# predicted genes ($\geq$ 3000 bp) & 61 + 0 part \\ \hline
\# predicted rRNA genes & 7 + 3 part \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}