output/quast/Enterococcus/report.tex

Version 1

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\begin{document}
\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# contigs ($\geq$ 0 bp) & 321 \\ \hline
\# contigs ($\geq$ 1000 bp) & 180 \\ \hline
\# contigs ($\geq$ 5000 bp) & 106 \\ \hline
\# contigs ($\geq$ 10000 bp) & 84 \\ \hline
\# contigs ($\geq$ 25000 bp) & 36 \\ \hline
\# contigs ($\geq$ 50000 bp) & 13 \\ \hline
Total length ($\geq$ 0 bp) & 3329954 \\ \hline
Total length ($\geq$ 1000 bp) & 3253815 \\ \hline
Total length ($\geq$ 5000 bp) & 3099388 \\ \hline
Total length ($\geq$ 10000 bp) & 2941721 \\ \hline
Total length ($\geq$ 25000 bp) & 2148681 \\ \hline
Total length ($\geq$ 50000 bp) & 1309856 \\ \hline
\# contigs & 319 \\ \hline
Largest contig & 167507 \\ \hline
Total length & 3329701 \\ \hline
GC (\%) & 42.93 \\ \hline
N50 & 41366 \\ \hline
N75 & 18092 \\ \hline
L50 & 21 \\ \hline
L75 & 53 \\ \hline
\# total reads & 42014317 \\ \hline
\# left & 21002102 \\ \hline
\# right & 21002102 \\ \hline
Mapped (\%) & 99.75 \\ \hline
Properly paired (\%) & 99.25 \\ \hline
Avg. coverage depth & 1883 \\ \hline
Coverage $\geq$ 1x (\%) & 100.0 \\ \hline
\# N's per 100 kbp & 0.00 \\ \hline
Complete BUSCO (\%) & 93.24 \\ \hline
Partial BUSCO (\%) & 0.68 \\ \hline
\# predicted genes (unique) & 2255 \\ \hline
\# predicted genes ($\geq$ 0 bp) & 2240 + 15 part \\ \hline
\# predicted genes ($\geq$ 300 bp) & 2172 + 14 part \\ \hline
\# predicted genes ($\geq$ 1500 bp) & 467 + 1 part \\ \hline
\# predicted genes ($\geq$ 3000 bp) & 54 + 1 part \\ \hline
\# predicted rRNA genes & 4 + 1 part \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}