output/quast/Enterobacter/transposed_report.tex
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Filename: output/quast/Enterobacter/transposed_report.tex

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\documentclass[12pt,a4paper]{article}
\begin{document}
\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{36}{|r}|}
\hline
Assembly & \# contigs ($\geq$ 0 bp) & \# contigs ($\geq$ 1000 bp) & \# contigs ($\geq$ 5000 bp) & \# contigs ($\geq$ 10000 bp) & \# contigs ($\geq$ 25000 bp) & \# contigs ($\geq$ 50000 bp) & Total length ($\geq$ 0 bp) & Total length ($\geq$ 1000 bp) & Total length ($\geq$ 5000 bp) & Total length ($\geq$ 10000 bp) & Total length ($\geq$ 25000 bp) & Total length ($\geq$ 50000 bp) & \# contigs & Largest contig & Total length & GC (\%) & N50 & N75 & L50 & L75 & \# total reads & \# left & \# right & Mapped (\%) & Properly paired (\%) & Avg. coverage depth & Coverage $\geq$ 1x (\%) & \# N's per 100 kbp & Complete BUSCO (\%) & Partial BUSCO (\%) & \# predicted genes (unique) & \# predicted genes ($\geq$ 0 bp) & \# predicted genes ($\geq$ 300 bp) & \# predicted genes ($\geq$ 1500 bp) & \# predicted genes ($\geq$ 3000 bp) & \# predicted rRNA genes \\ \hline
spades & 15269 & 2357 & 21 & 0 & 0 & 0 & 9480477 & 3815843 & 133432 & 0 & 0 & 0 & 15134 & 9825 & 9459172 & 56.06 & 801 & 452 & 3376 & 7317 & 68205781 & 34082806 & 34082806 & 99.49 & 80.31 & 1067 & 99.98 & 0.00 & 54.73 & 16.22 & 11813 & 8618 + 3198 part & 6085 + 2406 part & 118 + 28 part & 7 + 0 part & 11 + 3 part \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}

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