output/quast/Enterobacter/report.tex

Version 1

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\begin{document}
\begin{table}[ht]
\begin{center}
\caption{All statistics are based on contigs of size $\geq$ 200 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
\begin{tabular}{|l*{1}{|r}|}
\hline
Assembly & spades \\ \hline
\# contigs ($\geq$ 0 bp) & 15269 \\ \hline
\# contigs ($\geq$ 1000 bp) & 2357 \\ \hline
\# contigs ($\geq$ 5000 bp) & 21 \\ \hline
\# contigs ($\geq$ 10000 bp) & 0 \\ \hline
\# contigs ($\geq$ 25000 bp) & 0 \\ \hline
\# contigs ($\geq$ 50000 bp) & 0 \\ \hline
Total length ($\geq$ 0 bp) & 9480477 \\ \hline
Total length ($\geq$ 1000 bp) & 3815843 \\ \hline
Total length ($\geq$ 5000 bp) & 133432 \\ \hline
Total length ($\geq$ 10000 bp) & 0 \\ \hline
Total length ($\geq$ 25000 bp) & 0 \\ \hline
Total length ($\geq$ 50000 bp) & 0 \\ \hline
\# contigs & 15134 \\ \hline
Largest contig & 9825 \\ \hline
Total length & 9459172 \\ \hline
GC (\%) & 56.06 \\ \hline
N50 & 801 \\ \hline
N75 & 452 \\ \hline
L50 & 3376 \\ \hline
L75 & 7317 \\ \hline
\# total reads & 68205781 \\ \hline
\# left & 34082806 \\ \hline
\# right & 34082806 \\ \hline
Mapped (\%) & 99.49 \\ \hline
Properly paired (\%) & 80.31 \\ \hline
Avg. coverage depth & 1067 \\ \hline
Coverage $\geq$ 1x (\%) & 99.98 \\ \hline
\# N's per 100 kbp & 0.00 \\ \hline
Complete BUSCO (\%) & 54.73 \\ \hline
Partial BUSCO (\%) & 16.22 \\ \hline
\# predicted genes (unique) & 11813 \\ \hline
\# predicted genes ($\geq$ 0 bp) & 8618 + 3198 part \\ \hline
\# predicted genes ($\geq$ 300 bp) & 6085 + 2406 part \\ \hline
\# predicted genes ($\geq$ 1500 bp) & 118 + 28 part \\ \hline
\# predicted genes ($\geq$ 3000 bp) & 7 + 0 part \\ \hline
\# predicted rRNA genes & 11 + 3 part \\ \hline
\end{tabular}
\end{center}
\end{table}
\end{document}