Data files

Initial rate kinetics for the xylonate dehydratase of Caulobacter crescentus, xylonate saturation.

Initial rate kinetics for xylose dehydrogenase of Caulobacter crescentus, saturation with xylose and NAD, and inhibition by NADH and xylonolactone.

Initial rate kinetics for the xylonolactonase reaction of Caulobacter crescentus, xylonolactone saturation for the enzyme catalysed reaction, and for the non-enzymatic reaction.

This ZIP archive contains 6 input data tables from the xPore RNA modification analysis, organized by experimental conditions. These tables include modification counts and other relevant data used for downstream analysis and visualization.

This Quarto Markdown file contains a step-by-step workflow for analyzing xPore RNA modification data. It includes filtering, statistical analysis, and visualization to identify and explore differences in RNA modifications between samples. The outputs include:

• PCA plots to check sample clustering
• k-mer counts to see sequence patterns
• Volcano plots to show significant changes
• Heatmaps of modification levels
• Other visual summaries to help interpret the results

This workflow makes it easy ...

This ZIP archive contains high-quality PDF figures generated from the postprocessing of xPore RNA modification data. These visualizations summarize key findings and trends across experimental conditions, supporting the interpretation of differential RNA modifications. These figures were produced using a Quarto workflow and are intended for use in reports, presentations, or publications.

The aim of this experiment is to identyfy the bottleneck of xylanfermentation targeting MCC by shortening the HRT from 6 to 1 day

In order to improve the MCC yield obtained from CSTR operation, an SBR operation was conducted varying the HRT aiming a greater caproate and caprilate production. On day 179, a yeast extraction in the feeding was assessed, and finally, on day 252, vitamins were also added in the feeding

When the pseudo-steady state was reached in every SBR operation (SBR HRT 4d (day 34), SBR HRT 2d (day 57), SBR HRT 1d (day 147), SBR HRT 2d+ye (day 253)) the cycle characterisation was performed monitoring the substrate and product evolution during the whole cycle with the aim of assessing the substrate consumption rate and the intermediate products which are produced during the cycle