scripts/Pcitri_assembly1_IPS_commands.txt

Version 1

National Institute of Biology, Department of Biotechnology and Systems Biology projects

SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.

Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes

Investigation: _I_T3.1_mealybug project: _p_SUSPHIRE Short Name: P4_Pcitri_tr Title: P. citri transcriptome study Description: We are interested in certain mealybugs both because they are important pests and very difficult to control but because their sex pheromones are irregular terpenoids, which are (a) very cool molecules and (b) extremely difficult and expensive to make using chemistry.In our project, we will be doing comparative transcriptomics of virgin and mated females to attempt to ...

Short Name: 06_assembly1-IPS Assay Class: DRY Assay Type: IPS Title: Assembly1 InterProScan Description: InterProScan run for assembly1 transcripts. AA sequences were obtained by runing transeq and filtering to 3 longest ORFs per transcript. Phenodata: ../../phenodata_20181003.txt Featuredata: Data: ../_A_assembly1-rnaSPAdes/output/soft_filtered_transcripts.fasta