/intermediate/indexGFFmerged.log
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SEEK ID: https://fairdomhub.org/data_files/3557?version=1
Filename: intermediate/indexGFFmerged.log
Format: Plain text document
Size: 5.92 MB
STAR version=2.7.3a
STAR compilation time,server,dir=Tue Oct 8 14:26:19 EDT 2019 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
##### Command Line:
STAR --runThreadN 30 --runMode genomeGenerate --genomeDir ../intermediate/gff-merged/ --genomeFastaFiles ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta --limitGenomeGenerateRAM=242371378560
##### Initial USER parameters from Command Line:
###### All USER parameters from Command Line:
runThreadN                    30     ~RE-DEFINED
runMode                       genomeGenerate     ~RE-DEFINED
genomeDir                     ../intermediate/gff-merged/     ~RE-DEFINED
genomeFastaFiles              ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta        ~RE-DEFINED
limitGenomeGenerateRAM        242371378560     ~RE-DEFINED
##### Finished reading parameters from all sources

##### Final user re-defined parameters-----------------:
runMode                           genomeGenerate
runThreadN                        30
genomeDir                         ../intermediate/gff-merged/
genomeFastaFiles                  ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta   
limitGenomeGenerateRAM            242371378560

-------------------------------
##### Final effective command line:
STAR   --runMode genomeGenerate   --runThreadN 30   --genomeDir ../intermediate/gff-merged/   --genomeFastaFiles ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta      --limitGenomeGenerateRAM 242371378560
----------------------------------------

Finished loading and checking parameters
Feb 05 11:50:44 ... starting to generate Genome files
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 0  "PGSC0003DMT400000002" chrStart: 0
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 1  "PGSC0003DMT400000009" chrStart: 262144
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 2  "PGSC0003DMT400000019" chrStart: 524288
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 3  "PGSC0003DMT400000024" chrStart: 786432
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 4  "PGSC0003DMT400000025" chrStart: 1048576
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 5  "PGSC0003DMT400000060" chrStart: 1310720
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 6  "PGSC0003DMT400000061" chrStart: 1572864
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 7  "PGSC0003DMT400000080" chrStart: 1835008
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8  "PGSC0003DMT400000086" chrStart: 2097152
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 9  "PGSC0003DMT400000108" chrStart: 2359296
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 10  "PGSC0003DMT400000120" chrStart: 2621440
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 11  "PGSC0003DMT400000123" chrStart: 2883584
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 12  "PGSC0003DMT400000126" chrStart: 3145728
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 13  "PGSC0003DMT400000129" chrStart: 3407872
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 14  "PGSC0003DMT400000156" chrStart: 3670016
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 15  "PGSC0003DMT400000167" chrStart: 3932160
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16  "PGSC0003DMT400000170" chrStart: 4194304
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17  "PGSC0003DMT400000194" chrStart: 4456448
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 18  "PGSC0003DMT400000205" chrStart: 4718592
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 19  "PGSC0003DMT400000240" chrStart: 4980736
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 20  "PGSC0003DMT400000252" chrStart: 5242880
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 21  "PGSC0003DMT400000254" chrStart: 5505024
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 22  "PGSC0003DMT400000256" chrStart: 5767168
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 23  "PGSC0003DMT400000286" chrStart: 6029312
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 24  "PGSC0003DMT400000287" chrStart: 6291456
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 25  "PGSC0003DMT400000299" chrStart: 6553600
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 26  "PGSC0003DMT400000313" chrStart: 6815744
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 27  "PGSC0003DMT400000320" chrStart: 7077888
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 28  "PGSC0003DMT400000330" chrStart: 7340032
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 29  "PGSC0003DMT400000331" chrStart: 7602176
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 30  "PGSC0003DMT400000339" chrStart: 7864320
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 31  "PGSC0003DMT400000343" chrStart: 8126464
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 32  "PGSC0003DMT400000349" chrStart: 8388608
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 33  "PGSC0003DMT400000351" chrStart: 8650752
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 34  "PGSC0003DMT400000378" chrStart: 8912896
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 35  "PGSC0003DMT400000441" chrStart: 9175040
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 36  "PGSC0003DMT400000448" chrStart: 9437184
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37  "PGSC0003DMT400000483" chrStart: 9699328
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 38  "PGSC0003DMT400000489" chrStart: 9961472
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 39  "PGSC0003DMT400000510" chrStart: 10223616
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 40  "PGSC0003DMT400000512" chrStart: 10485760
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 41  "PGSC0003DMT400000565" chrStart: 10747904
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 42  "PGSC0003DMT400000570" chrStart: 11010048
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 43  "PGSC0003DMT400000571" chrStart: 11272192
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 44  "PGSC0003DMT400000585" chrStart: 11534336
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 45  "PGSC0003DMT400000600" chrStart: 11796480
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 46  "PGSC0003DMT400000601" chrStart: 12058624
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 47  "PGSC0003DMT400000614" chrStart: 12320768
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 48  "PGSC0003DMT400000660" chrStart: 12582912
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49  "PGSC0003DMT400000676" chrStart: 12845056
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 50  "PGSC0003DMT400000679" chrStart: 13107200
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 51  "PGSC0003DMT400000700" chrStart: 13369344
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 52  "PGSC0003DMT400000701" chrStart: 13631488
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 53  "PGSC0003DMT400000703" chrStart: 13893632
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 54  "PGSC0003DMT400000704" chrStart: 14155776
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 55  "PGSC0003DMT400000705" chrStart: 14417920
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 56  "PGSC0003DMT400000706" chrStart: 14680064
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 57  "PGSC0003DMT400000708" chrStart: 14942208
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 58  "PGSC0003DMT400000710" chrStart: 15204352
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 59  "PGSC0003DMT400000712" chrStart: 15466496
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 60  "PGSC0003DMT400000713" chrStart: 15728640
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 61  "PGSC0003DMT400000714" chrStart: 15990784
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 62  "PGSC0003DMT400000752" chrStart: 16252928
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 63  "PGSC0003DMT400000776" chrStart: 16515072
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 64  "PGSC0003DMT400000780" chrStart: 16777216
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 65  "PGSC0003DMT400000785" chrStart: 17039360
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 66  "PGSC0003DMT400000791" chrStart: 17301504
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 67  "PGSC0003DMT400000793" chrStart: 17563648
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 68  "PGSC0003DMT400000808" chrStart: 17825792
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 69  "PGSC0003DMT400000824" chrStart: 18087936
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 70  "PGSC0003DMT400000825" chrStart: 18350080
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 74  "PGSC0003DMT400000847" chrStart: 19398656
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 75  "PGSC0003DMT400000848" chrStart: 19660800
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 76  "PGSC0003DMT400000858" chrStart: 19922944
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 82  "PGSC0003DMT400000985" chrStart: 21495808
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 85  "PGSC0003DMT400001035" chrStart: 22282240
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 86  "PGSC0003DMT400001036" chrStart: 22544384
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 87  "PGSC0003DMT400001040" chrStart: 22806528
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 88  "PGSC0003DMT400001061" chrStart: 23068672
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 89  "PGSC0003DMT400001124" chrStart: 23330816
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 90  "PGSC0003DMT400001144" chrStart: 23592960
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 91  "PGSC0003DMT400001167" chrStart: 23855104
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 92  "PGSC0003DMT400001184" chrStart: 24117248
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 93  "PGSC0003DMT400001187" chrStart: 24379392
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 94  "PGSC0003DMT400001192" chrStart: 24641536
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 95  "PGSC0003DMT400001209" chrStart: 24903680
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 96  "PGSC0003DMT400001212" chrStart: 25165824
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 97  "PGSC0003DMT400001227" chrStart: 25427968
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 99  "PGSC0003DMT400001242" chrStart: 25952256
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 100  "PGSC0003DMT400001251" chrStart: 26214400
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 101  "PGSC0003DMT400001255" chrStart: 26476544
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 102  "PGSC0003DMT400001259" chrStart: 26738688
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 103  "PGSC0003DMT400001382" chrStart: 27000832
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 104  "PGSC0003DMT400001408" chrStart: 27262976
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 105  "PGSC0003DMT400001409" chrStart: 27525120
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 106  "PGSC0003DMT400001418" chrStart: 27787264
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 107  "PGSC0003DMT400001425" chrStart: 28049408
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 108  "PGSC0003DMT400001426" chrStart: 28311552
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 110  "PGSC0003DMT400001460" chrStart: 28835840
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 111  "PGSC0003DMT400001464" chrStart: 29097984
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 112  "PGSC0003DMT400001491" chrStart: 29360128
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 113  "PGSC0003DMT400001495" chrStart: 29622272
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 114  "PGSC0003DMT400001535" chrStart: 29884416
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 115  "PGSC0003DMT400001555" chrStart: 30146560
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 116  "PGSC0003DMT400001574" chrStart: 30408704
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 117  "PGSC0003DMT400001582" chrStart: 30670848
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 118  "PGSC0003DMT400001583" chrStart: 30932992
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16894  "PGSC0003DMT400096822" chrStart: 4428660736
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16897  "PGSC0003DMT400096828" chrStart: 4429447168
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16898  "PGSC0003DMT400096829" chrStart: 4429709312
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16899  "PGSC0003DMT400096832" chrStart: 4429971456
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17394  "PGSC0003DMT400097648" chrStart: 4559732736
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17513  "PGSC0003DMT402000034" chrStart: 4590927872
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17514  "PGSC0003DMT402000035" chrStart: 4591190016
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17515  "PGSC0003DMT402000036" chrStart: 4591452160
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17516  "PGSC0003DMT402000037" chrStart: 4591714304
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17517  "PGSC0003DMT402000038" chrStart: 4591976448
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17518  "PGSC0003DMT402000039" chrStart: 4592238592
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37800  "Sotub07g029020.1.1" chrStart: 9909043200
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37801  "Sotub07g029030.1.1" chrStart: 9909305344
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37805  "Sotub07g029080.1.1" chrStart: 9910353920
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37806  "Sotub07g029090.1.1" chrStart: 9910616064
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37808  "Sotub07g029110.1.1" chrStart: 9911140352
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49228  "Sotub12g031950.1.1" chrStart: 12904824832
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49229  "Sotub12g031960.1.1" chrStart: 12905086976
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49230  "Sotub12g031970.1.1" chrStart: 12905349120
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49231  "Sotub12g031980.1.1" chrStart: 12905611264
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49232  "Sotub12g031990.1.1" chrStart: 12905873408
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49233  "Sotub12g032000.1.1" chrStart: 12906135552
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49234  "Sotub12g032010.1.1" chrStart: 12906397696
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49235  "Sotub12g032020.1.1" chrStart: 12906659840
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49236  "Sotub12g032030.1.1" chrStart: 12906921984
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49237  "Sotub12g032060.1.1" chrStart: 12907184128
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49238  "Sotub12g032070.1.1" chrStart: 12907446272
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49239  "Sotub12g032080.1.1" chrStart: 12907708416
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49240  "Sotub12g032090.1.1" chrStart: 12907970560
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49241  "Sotub12g032100.1.1" chrStart: 12908232704
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49242  "Sotub12g032110.1.1" chrStart: 12908494848
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49243  "Sotub12g032120.1.1" chrStart: 12908756992
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49244  "Sotub12g032130.1.1" chrStart: 12909019136
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49245  "Sotub12g032140.1.1" chrStart: 12909281280
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49246  "Sotub12g032150.1.1" chrStart: 12909543424
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49247  "Sotub12g032160.1.1" chrStart: 12909805568
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49248  "Sotub12g032180.1.1" chrStart: 12910067712
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49249  "Sotub12g032190.1.1" chrStart: 12910329856
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49250  "Sotub12g032200.1.1" chrStart: 12910592000
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49251  "Sotub12g032210.1.1" chrStart: 12910854144
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49252  "Sotub12g032220.1.1" chrStart: 12911116288
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49253  "Sotub12g032230.1.1" chrStart: 12911378432
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49254  "Sotub12g032240.1.1" chrStart: 12911640576
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49255  "Sotub12g032250.1.1" chrStart: 12911902720
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49256  "Sotub12g032260.1.1" chrStart: 12912164864
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49257  "Sotub12g032270.1.1" chrStart: 12912427008
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49258  "Sotub12g032280.1.1" chrStart: 12912689152
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49259  "Sotub12g032290.1.1" chrStart: 12912951296
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49260  "Sotub12g032300.1.1" chrStart: 12913213440
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49261  "Sotub12g032310.1.1" chrStart: 12913475584
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49262  "Sotub12g032320.1.1" chrStart: 12913737728
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49263  "Sotub12g032330.1.1" chrStart: 12913999872
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49264  "Sotub12g032340.1.1" chrStart: 12914262016
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49265  "Sotub12g032350.1.1" chrStart: 12914524160
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49266  "Sotub12g032360.1.1" chrStart: 12914786304
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49267  "Sotub12g032370.1.1" chrStart: 12915048448
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49268  "Sotub12g032380.1.1" chrStart: 12915310592
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49269  "Sotub12g032390.1.1" chrStart: 12915572736
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49270  "Sotub12g032400.1.1" chrStart: 12915834880
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49271  "Sotub12g032410.1.1" chrStart: 12916097024
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49272  "Sotub12g032420.1.1" chrStart: 12916359168
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49273  "Sotub12g032430.1.1" chrStart: 12916621312
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49274  "Sotub12g032440.1.1" chrStart: 12916883456
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49275  "Sotub12g032460.1.1" chrStart: 12917145600
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49276  "Sotub12g032470.1.1" chrStart: 12917407744
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49277  "Sotub12g032480.1.1" chrStart: 12917669888
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49278  "Sotub12g032490.1.1" chrStart: 12917932032
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49279  "Sotub12g032500.1.1" chrStart: 12918194176
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49280  "Sotub12g032510.1.1" chrStart: 12918456320
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49281  "Sotub12g032520.1.1" chrStart: 12918718464
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49282  "Sotub12g032530.1.1" chrStart: 12918980608
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49283  "Sotub12g032540.1.1" chrStart: 12919242752
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49284  "Sotub12g032550.1.1" chrStart: 12919504896
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49285  "Sotub12g032560.1.1" chrStart: 12919767040
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49286  "Sotub12g032570.1.1" chrStart: 12920029184
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49287  "Sotub12g032580.1.1" chrStart: 12920291328
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49288  "Sotub12g032590.1.1" chrStart: 12920553472
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49289  "Sotub12g032600.1.1" chrStart: 12920815616
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49290  "Sotub12g032610.1.1" chrStart: 12921077760
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49291  "Sotub12g032620.1.1" chrStart: 12921339904
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49292  "Sotub12g032650.1.1" chrStart: 12921602048
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49293  "Sotub12g032660.1.1" chrStart: 12921864192
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49294  "Sotub12g032670.1.1" chrStart: 12922126336
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49295  "Sotub12g032680.1.1" chrStart: 12922388480
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49296  "Sotub12g032690.1.1" chrStart: 12922650624
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49297  "Sotub12g032700.1.1" chrStart: 12922912768
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49298  "Sotub12g032710.1.1" chrStart: 12923174912
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49299  "Sotub12g032720.1.1" chrStart: 12923437056
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49300  "Sotub12g032730.1.1" chrStart: 12923699200
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49301  "Sotub12g032740.1.1" chrStart: 12923961344
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49302  "Sotub12g032750.1.1" chrStart: 12924223488
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49303  "Sotub12g032760.1.1" chrStart: 12924485632
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49304  "Sotub12g032780.1.1" chrStart: 12924747776
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49305  "Sotub12g032790.1.1" chrStart: 12925009920
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49306  "Sotub12g032810.1.1" chrStart: 12925272064
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49307  "Sotub12g032820.1.1" chrStart: 12925534208
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49308  "Sotub12g032830.1.1" chrStart: 12925796352
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49309  "Sotub12g032840.1.1" chrStart: 12926058496
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49310  "Sotub12g032850.1.1" chrStart: 12926320640
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49311  "Sotub12g032860.1.1" chrStart: 12926582784
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49312  "Sotub12g032870.1.1" chrStart: 12926844928
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49313  "Sotub12g032880.1.1" chrStart: 12927107072
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49314  "Sotub12g032890.1.1" chrStart: 12927369216
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49315  "Sotub12g032900.1.1" chrStart: 12927631360
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49316  "Sotub12g032910.1.1" chrStart: 12927893504
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49317  "Sotub12g032930.1.1" chrStart: 12928155648
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49318  "Sotub12g032940.1.1" chrStart: 12928417792
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49319  "Sotub12g032950.1.1" chrStart: 12928679936
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49320  "Sotub12g032970.1.1" chrStart: 12928942080
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49321  "Sotub12g032980.1.1" chrStart: 12929204224
Estimated genome size=13130466368   12929466368   201000000
GstrandBit=34
Number of SA indices: 97167766
Feb 05 11:51:43 ... starting to sort Suffix Array. This may take a long time...
Number of chunks: 32;   chunks size limit: 26804896 bytes
Feb 05 11:52:15 ... sorting Suffix Array chunks and saving them to disk...
Writing 26735552 bytes into ../intermediate/gff-merged//SA_23 ; empty space on disk = 822377816064 bytes ... done
Writing 23292480 bytes into ../intermediate/gff-merged//SA_1 ; empty space on disk = 822351077376 bytes ... done
Writing 22484624 bytes into ../intermediate/gff-merged//SA_29 ; empty space on disk = 822327783424 bytes ... done
Writing 25166608 bytes into ../intermediate/gff-merged//SA_4 ; empty space on disk = 822305296384 bytes ... done
Writing 22577760 bytes into ../intermediate/gff-merged//SA_0 ; empty space on disk = 822280126464 bytes ... done
Writing 26459552 bytes into ../intermediate/gff-merged//SA_19 ; empty space on disk = 822257545216 bytes ... done
Writing 21845520 bytes into ../intermediate/gff-merged//SA_7 ; empty space on disk = 822231085056 bytes ... done
Writing 26564496 bytes into ../intermediate/gff-merged//SA_17 ; empty space on disk = 822209236992 bytes ... done
Writing 26362728 bytes into ../intermediate/gff-merged//SA_14 ; empty space on disk = 822182670336 bytes ... done
Writing 25646656 bytes into ../intermediate/gff-merged//SA_13 ; empty space on disk = 822156304384 bytes ...Writing 25848904 bytes into ../intermediate/gff-merged//SA_24 ; empty space on disk = 822154702848 bytes ... done
 done
Writing 23282416 bytes into ../intermediate/gff-merged//SA_28 ; empty space on disk = 822104805376 bytes ... done
Writing 24303488 bytes into ../intermediate/gff-merged//SA_15 ; empty space on disk = 822081519616 bytes ... done
Writing 22967208 bytes into ../intermediate/gff-merged//SA_27 ; empty space on disk = 822057213952 bytes ... done
Writing 25740576 bytes into ../intermediate/gff-merged//SA_5 ; empty space on disk = 822034243584 bytes ... done
Writing 26628088 bytes into ../intermediate/gff-merged//SA_18 ; empty space on disk = 822008500224 bytes ... done
Writing 21278296 bytes into ../intermediate/gff-merged//SA_2 ; empty space on disk = 821981872128 bytes ... done
Writing 23546936 bytes into ../intermediate/gff-merged//SA_26 ; empty space on disk = 821960593408 bytes ... done
Writing 25609272 bytes into ../intermediate/gff-merged//SA_22 ; empty space on disk = 821937045504 bytes ... done
Writing 23250992 bytes into ../intermediate/gff-merged//SA_21 ; empty space on disk = 821911433216 bytes ... done
Writing 26448872 bytes into ../intermediate/gff-merged//SA_3 ; empty space on disk = 821888180224 bytes ... done
Writing 24466576 bytes into ../intermediate/gff-merged//SA_25 ; empty space on disk = 821861728256 bytes ... done
Writing 25729672 bytes into ../intermediate/gff-merged//SA_12 ; empty space on disk = 821837258752 bytes ...Writing 23801208 bytes into ../intermediate/gff-merged//SA_16 ; empty space on disk = 821822877696 bytes ... done
 done
Writing 24202040 bytes into ../intermediate/gff-merged//SA_8 ; empty space on disk = 821787721728 bytes ... done
Writing 25355856 bytes into ../intermediate/gff-merged//SA_6 ; empty space on disk = 821763518464 bytes ... done
Writing 26402832 bytes into ../intermediate/gff-merged//SA_11 ; empty space on disk = 821738160128 bytes ... done
Writing 26775704 bytes into ../intermediate/gff-merged//SA_9 ; empty space on disk = 821711753216 bytes ... done
Writing 26296464 bytes into ../intermediate/gff-merged//SA_10 ; empty space on disk = 821684973568 bytes ... done
Writing 25477624 bytes into ../intermediate/gff-merged//SA_20 ; empty space on disk = 821658673152 bytes ... done
Writing 7344416 bytes into ../intermediate/gff-merged//SA_31 ; empty space on disk = 821633191936 bytes ... done
Writing 25448712 bytes into ../intermediate/gff-merged//SA_30 ; empty space on disk = 821625843712 bytes ... done
Feb 05 11:53:39 ... loading chunks from disk, packing SA...
Feb 05 11:54:05 ... finished generating suffix array
Feb 05 11:54:05 ... generating Suffix Array index
Feb 05 11:54:28 ... completed Suffix Array index
Feb 05 11:54:28 ... writing Genome to disk ...
Writing 12929466368 bytes into ../intermediate/gff-merged//Genome ; empty space on disk = 822377807872 bytes ... done
SA size in bytes: 425108979
Feb 05 11:54:40 ... writing Suffix Array to disk ...
Writing 425108979 bytes into ../intermediate/gff-merged//SA ; empty space on disk = 809448337408 bytes ... done
Feb 05 11:54:40 ... writing SAindex to disk
Writing 8 bytes into ../intermediate/gff-merged//SAindex ; empty space on disk = 809023225856 bytes ... done
Writing 120 bytes into ../intermediate/gff-merged//SAindex ; empty space on disk = 809023225856 bytes ... done
Writing 1655351975 bytes into ../intermediate/gff-merged//SAindex ; empty space on disk = 809023225856 bytes ... done
Feb 05 11:54:41 ..... finished successfully
DONE: Genome generation, EXITING
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