/intermediate/gff-merged/chrNameLength.txt Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping
SEEK ID: https://fairdomhub.org/data_files/3553?version=1
Filename:
intermediate/gff-merged/chrNameLength.txt
Format: Plain text document
Size: 1.13 MB
PGSC0003DMT400000002 1735 PGSC0003DMT400000009 1746 PGSC0003DMT400000019 2041 PGSC0003DMT400000024 1221 PGSC0003DMT400000025 3217 PGSC0003DMT400000060 1169 PGSC0003DMT400000061 2763 PGSC0003DMT400000080 921 PGSC0003DMT400000086 327 PGSC0003DMT400000108 4518 PGSC0003DMT400000120 570 PGSC0003DMT400000123 570 PGSC0003DMT400000126 1676 PGSC0003DMT400000129 812 PGSC0003DMT400000156 1324 PGSC0003DMT400000167 414 PGSC0003DMT400000170 978 PGSC0003DMT400000194 1261 PGSC0003DMT400000205 1056 PGSC0003DMT400000240 1013 PGSC0003DMT400000252 693 PGSC0003DMT400000254 384 PGSC0003DMT400000256 1452 PGSC0003DMT400000286 1060 PGSC0003DMT400000287 399 PGSC0003DMT400000299 484 PGSC0003DMT400000313 943 PGSC0003DMT400000320 3396 PGSC0003DMT400000330 381 PGSC0003DMT400000331 856 PGSC0003DMT400000339 258 PGSC0003DMT400000343 1468 PGSC0003DMT400000349 1439 PGSC0003DMT400000351 2739 PGSC0003DMT400000378 2374 PGSC0003DMT400000441 636 PGSC0003DMT400000448 1000 PGSC0003DMT400000483 712 PGSC0003DMT400000489 1146 PGSC0003DMT400000510 3778 PGSC0003DMT400000512 771 PGSC0003DMT400000565 1365 PGSC0003DMT400000570 1134 PGSC0003DMT400000571 855 PGSC0003DMT400000585 477 PGSC0003DMT400000600 386 PGSC0003DMT400000601 588 PGSC0003DMT400000614 1060 PGSC0003DMT400000660 1502 PGSC0003DMT400000676 1101 PGSC0003DMT400000679 3885 PGSC0003DMT400000700 744 PGSC0003DMT400000701 1196 PGSC0003DMT400000703 1228 PGSC0003DMT400000704 3997 PGSC0003DMT400000705 3067 PGSC0003DMT400000706 1053 PGSC0003DMT400000708 565 PGSC0003DMT400000710 435 PGSC0003DMT400000712 861 PGSC0003DMT400000713 2674 PGSC0003DMT400000714 667 PGSC0003DMT400000752 1464 PGSC0003DMT400000776 735 PGSC0003DMT400000780 1154 PGSC0003DMT400000785 810 PGSC0003DMT400000791 1141 PGSC0003DMT400000793 237 PGSC0003DMT400000808 3997 PGSC0003DMT400000824 1543 PGSC0003DMT400000825 952 PGSC0003DMT400000835 2875 PGSC0003DMT400000840 369 PGSC0003DMT400000846 409 PGSC0003DMT400000847 731 PGSC0003DMT400000848 673 PGSC0003DMT400000858 2867 PGSC0003DMT400000866 577 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Created: 22nd Mar 2020 at 23:04
Last updated: 22nd Mar 2020 at 23:04
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Version 1 (earliest) Created 22nd Mar 2020 at 23:04 by Andrej Blejec
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https://orcid.org/0000-0001-7484-6031
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, INDIE - Biotechnological production of sustainable indole, _p_stRT, Public project, Playground, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture
Institutions: National Institute of Biology, NewHorizon
https://orcid.org/0000-0001-7484-6031
Advanced Programmes list for this Data file with search and filtering
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Advanced Projects list for this Data file with search and filtering
project: _p_stRT Short Name: stRT Title: Solanum tuberosum Reference Transcriptomes Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato pISA projects path: ../pISA-Projects Local pISA-tree organisation: National Institute of Biology pISA project creation date: 2019-10-22 pISA project creator: Maja Zagorscak, Ziva Ramsak, Marko Petek Project funding code: This project was supported by the Slovenian Research Agency (grants P4-0165, J4-4165, J4-7636, ...
Programme: NIBSys
Public web page: http://www.nib.si/eng/index.php/systems-biology
Start date: 1st Dec 2017
End date: 1st Jan 2020
Advanced Investigations list for this Data file with search and filtering
Investigation: _I_STRT Short Name: STRT Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak, Ziva Ramsak, Marko Petek Principal investigator: Kristina Gruden License: MIT Sharing permission: Public Upload to FAIRDOMHub: Yes
RELATED ...
Submitter: Maja Zagorscak
Studies: SupplementaryInformation, _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: Supplementary Information, _A_01_GC_content-count, _A_01_evigene, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_cdhit_3cvs-GFFmerged, _A_03.1_filtering, _A_03.2_components, _A_03_components_3cvs-GFFmerged, _A_04_BUSCO_3cvs-GFFmerged, _A_04_TransRate, _A_05_BUSCO, _A_05_MSA_3cvs-GFFmerged, _A_06_tr_rep-transrate, _A_07_Desiree-mapping, _A_08_centrifuge_3cvs-GFFmerged, _A_09_annotation-GFFmerged
Advanced Studies list for this Data file with search and filtering
Short Name: 04_stPanTr Title: Solanum tuberosum Pan-Transcriptome Description: Solanum tuberosum Pan-Transcriptome Raw Data: pISA Study creation date: 2019-10-22 pISA Study creator: Maja Zagorscak Principal investigator: Kristina Gruden License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_STRT
Assays: _A_01_GC_content-count, _A_02_cdhit_3cvs-GFFmerged, _A_03_components_3cvs-GFFmerged, _A_04_BUSCO_3cvs-GFFmerged, _A_05_MSA_3cvs-GFFmerged, _A_06_tr_rep-transrate, _A_07_Desiree-mapping, _A_08_centrifuge_3cvs-GFFmerged, _A_09_annotation-GFFmerged
Advanced Assays list for this Data file with search and filtering
Short Name: 07_Desiree-mapping Assay Class: DRY Assay Type: mapping Title: Desiree mapping Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT
Study: _S_04_stPanTr
