/intermediate/indexDesiree.log
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_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping
SEEK ID: https://fairdomhub.org/data_files/3556?version=1
Filename: intermediate/indexDesiree.log
Format: Plain text document
Size: 5.41 MB
STAR version=2.7.3a
STAR compilation time,server,dir=Tue Oct 8 14:26:19 EDT 2019 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
##### Command Line:
STAR --runThreadN 30 --runMode genomeGenerate --genomeDir ../intermediate/Desiree/ --genomeFastaFiles ../input/stCuSTr-D_tr_representatives.fasta --limitGenomeGenerateRAM=242371378560
##### Initial USER parameters from Command Line:
###### All USER parameters from Command Line:
runThreadN                    30     ~RE-DEFINED
runMode                       genomeGenerate     ~RE-DEFINED
genomeDir                     ../intermediate/Desiree/     ~RE-DEFINED
genomeFastaFiles              ../input/stCuSTr-D_tr_representatives.fasta        ~RE-DEFINED
limitGenomeGenerateRAM        242371378560     ~RE-DEFINED
##### Finished reading parameters from all sources

##### Final user re-defined parameters-----------------:
runMode                           genomeGenerate
runThreadN                        30
genomeDir                         ../intermediate/Desiree/
genomeFastaFiles                  ../input/stCuSTr-D_tr_representatives.fasta   
limitGenomeGenerateRAM            242371378560

-------------------------------
##### Final effective command line:
STAR   --runMode genomeGenerate   --runThreadN 30   --genomeDir ../intermediate/Desiree/   --genomeFastaFiles ../input/stCuSTr-D_tr_representatives.fasta      --limitGenomeGenerateRAM 242371378560
----------------------------------------

Finished loading and checking parameters
Feb 05 11:44:01 ... starting to generate Genome files
../input/stCuSTr-D_tr_representatives.fasta : chr # 0  "CLCdnDe10_100013" chrStart: 0
../input/stCuSTr-D_tr_representatives.fasta : chr # 1  "CLCdnDe10_100016" chrStart: 262144
../input/stCuSTr-D_tr_representatives.fasta : chr # 2  "CLCdnDe7_121556" chrStart: 524288
../input/stCuSTr-D_tr_representatives.fasta : chr # 3  "CLCdnDe13_163868" chrStart: 786432
../input/stCuSTr-D_tr_representatives.fasta : chr # 4  "CLCdnDe10_100043" chrStart: 1048576
../input/stCuSTr-D_tr_representatives.fasta : chr # 5  "CLCdnDe10_100047" chrStart: 1310720
../input/stCuSTr-D_tr_representatives.fasta : chr # 6  "CLCdnDe2_83550" chrStart: 1572864
../input/stCuSTr-D_tr_representatives.fasta : chr # 7  "CLCdnDe10_100075" chrStart: 1835008
../input/stCuSTr-D_tr_representatives.fasta : chr # 8  "CLCdnDe10_100089" chrStart: 2097152
../input/stCuSTr-D_tr_representatives.fasta : chr # 9  "CLCdnDe10_100097" chrStart: 2359296
../input/stCuSTr-D_tr_representatives.fasta : chr # 10  "CLCdnDe10_100108" chrStart: 2621440
../input/stCuSTr-D_tr_representatives.fasta : chr # 11  "VdnDe7_32809" chrStart: 2883584
../input/stCuSTr-D_tr_representatives.fasta : chr # 12  "CLCdnDe10_100110" chrStart: 3145728
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Estimated genome size=15390409792   15189409792   201000000
GstrandBit=34
Number of SA indices: 107020008
Feb 05 11:45:11 ... starting to sort Suffix Array. This may take a long time...
Number of chunks: 31;   chunks size limit: 29522760 bytes
Feb 05 11:45:48 ... sorting Suffix Array chunks and saving them to disk...
Writing 23969152 bytes into ../intermediate/Desiree//SA_2 ; empty space on disk = 839699959808 bytes ... done
Writing 27910472 bytes into ../intermediate/Desiree//SA_13 ; empty space on disk = 839675990016 bytes ... done
Writing 27487432 bytes into ../intermediate/Desiree//SA_21 ; empty space on disk = 839648075776 bytes ... done
Writing 26591184 bytes into ../intermediate/Desiree//SA_8 ; empty space on disk = 839620587520 bytes ... done
Writing 27379288 bytes into ../intermediate/Desiree//SA_26 ; empty space on disk = 839593992192 bytes ... done
Writing 28086944 bytes into ../intermediate/Desiree//SA_0 ; empty space on disk = 839566610432 bytes ... done
Writing 26037400 bytes into ../intermediate/Desiree//SA_1 ; empty space on disk = 839538520064 bytes ...Writing 27773896 bytes into ../intermediate/Desiree//SA_12 ; empty space on disk = 839526334464 bytes ... done
 done
Writing 24792512 bytes into ../intermediate/Desiree//SA_9 ; empty space on disk = 839484706816 bytes ... done
Writing 27915896 bytes into ../intermediate/Desiree//SA_11 ; empty space on disk = 839459913728 bytes ... done
Writing 27519816 bytes into ../intermediate/Desiree//SA_22 ; empty space on disk = 839431995392 bytes ... done
Writing 28910960 bytes into ../intermediate/Desiree//SA_29 ; empty space on disk = 839404474368 bytes ... done
Writing 27763960 bytes into ../intermediate/Desiree//SA_5 ; empty space on disk = 839375560704 bytes ... done
Writing 27948488 bytes into ../intermediate/Desiree//SA_10 ; empty space on disk = 839347793920 bytes ... done
Writing 24194800 bytes into ../intermediate/Desiree//SA_7 ; empty space on disk = 839319842816 bytes ...Writing 28539904 bytes into ../intermediate/Desiree//SA_14 ; empty space on disk = 839297470464 bytes ... done
 done
Writing 25578984 bytes into ../intermediate/Desiree//SA_27 ; empty space on disk = 839267106816 bytes ... done
Writing 28216624 bytes into ../intermediate/Desiree//SA_24 ; empty space on disk = 839241527296 bytes ... done
Writing 28572712 bytes into ../intermediate/Desiree//SA_6 ; empty space on disk = 839213309952 bytes ... done
Writing 27853456 bytes into ../intermediate/Desiree//SA_17 ; empty space on disk = 839184736256 bytes ... done
Writing 28805112 bytes into ../intermediate/Desiree//SA_4 ; empty space on disk = 839156879360 bytes ... done
Writing 28507856 bytes into ../intermediate/Desiree//SA_16 ; empty space on disk = 839128072192 bytes ... done
Writing 29103904 bytes into ../intermediate/Desiree//SA_23 ; empty space on disk = 839099564032 bytes ...Writing 29229704 bytes into ../intermediate/Desiree//SA_19 ; empty space on disk = 839086501888 bytes ... done
 done
Writing 27993464 bytes into ../intermediate/Desiree//SA_28 ; empty space on disk = 839041224704 bytes ...Writing 26865896 bytes into ../intermediate/Desiree//SA_15 ; empty space on disk = 839036280832 bytes ... done
 done
Writing 29065520 bytes into ../intermediate/Desiree//SA_3 ; empty space on disk = 838986358784 bytes ... done
Writing 28868728 bytes into ../intermediate/Desiree//SA_20 ; empty space on disk = 838957289472 bytes ... done
Writing 28442152 bytes into ../intermediate/Desiree//SA_25 ; empty space on disk = 838928416768 bytes ... done
Writing 27782440 bytes into ../intermediate/Desiree//SA_18 ; empty space on disk = 838899974144 bytes ... done
Writing 28451408 bytes into ../intermediate/Desiree//SA_30 ; empty space on disk = 838872190976 bytes ... done
Feb 05 11:47:22 ... loading chunks from disk, packing SA...
Feb 05 11:47:53 ... finished generating suffix array
Feb 05 11:47:53 ... generating Suffix Array index
Feb 05 11:48:18 ... completed Suffix Array index
Feb 05 11:48:18 ... writing Genome to disk ...
Writing 15189409792 bytes into ../intermediate/Desiree//Genome ; empty space on disk = 839699951616 bytes ... done
SA size in bytes: 468212538
Feb 05 11:48:29 ... writing Suffix Array to disk ...
Writing 468212538 bytes into ../intermediate/Desiree//SA ; empty space on disk = 824510541824 bytes ... done
Feb 05 11:48:30 ... writing SAindex to disk
Writing 8 bytes into ../intermediate/Desiree//SAindex ; empty space on disk = 824042328064 bytes ... done
Writing 120 bytes into ../intermediate/Desiree//SAindex ; empty space on disk = 824042328064 bytes ... done
Writing 1655351975 bytes into ../intermediate/Desiree//SAindex ; empty space on disk = 824042328064 bytes ... done
Feb 05 11:48:30 ..... finished successfully
DONE: Genome generation, EXITING
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