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Created: 19th Jun 2026 at 14:25
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experimental data that were previously hosted on the original version of BioDare (biodare.ed.ac.uk), which opened in 2009, please see https://doi.org/10.1007/978-1-4939-0700-7_2. BioDare was designed as a repository of rhythmic biological data, especially for 24-hour circadian rhythms, with specialised analytical routines for period, phase and amplitude estimation on each data timeseries. Most rhythms tested were measured using gene expression, either directly as RNA levels, or indirectly using ...
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: https://biodare2.ed.ac.uk
Start date: 7th Jul 2006
End date: 21st Dec 2017
Collection of experiments created by Song, Y.H. on the original BioDare and automatically transferred to FAIRDOM Hub.
Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.
| Property | Value |
|---|---|
| BioDare ID | 13227587445347 |
| Author | Song, Y.H. |
| Institution | University of Washington |
| License | CC_BY |
Description
Literature data from: 'FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering' by: Song, Y.H..
CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Song, Y.H.
Study: Unpublished
Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.
| Property | Value |
|---|---|
| BioDare ID | 13228237712731 |
| Author | Song, Y.H. |
| Institution | University of Washington |
| License | CC_BY |
Description
Literature data from: 'FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering' by: Song, Y.H..
CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Song, Y.H.
Study: Unpublished
song2012 (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
floweringdataprotein (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Song, Y.H.
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Song, Y.H.
Submitter: Daniel Thedie
Readme file
Creator: Song, Y.H.
Submitter: Daniel Thedie
song2012 (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
floweringdata (from BioDare)
Creator: Song, Y.H.
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Song, Y.H.
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Song, Y.H.
Submitter: Daniel Thedie
Readme file
Creator: Song, Y.H.
Submitter: Daniel Thedie
