D.SEQ-250605SHO-4

Overview
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Source data: samples-250609-SC-R719C-D.SEQ.xlsx

UID : D.SEQ-250605SHO-4

File_PrimaryData : 210322Sho_D21-157040_sequence_1.fastq.gz

File_SecondaryData : 210322Sho_D21-157040_sequence_2.fastq.gz

Protocol : https://fairdomhub.org/sops/833

Scientist : MIT BioMicro Center

Link_PrimaryData : Will be updated with dbGaP study link

Link_SecondaryData : Will be updated with dbGaP study link

Checksum_PrimaryData : 6e4fc3cbf4d0b9859308d9163f085d60

Checksum_SecondaryData : 21c78e73b554f07e84e2878991957571

Parent : DNA-250605SHO-4

DataType : FASTQ

SequencingType : ShortRead

Sequencer : Illumina NextSeq500

F_bp : 20

R_bp : 57

LibraryStrategy : RNA-Seq

LibrarySource : TRANSCRIPTOMIC

LibrarySelection : RT-PCR

LibraryDesign : paired

Accession : Not specified

Repository : dbGaP

Creators and Submitter

Creators

Not specified

Submitter

Charles Demurjian

Activity

Views: 17

Created: 9th Jun 2025 at 15:32

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Advanced People list for this Sample with search and filtering

Charles Demurjian

Projects: Hi-IMPAcTB, MIT SRP, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Institutions: Massachusetts Institute of Technology

Advanced Programmes list for this Sample with search and filtering

NExtSEEK

No description specified

Projects: MIT SRP, Hi-IMPAcTB, MetNet, Endometriosis, Cancer Systems Biology Consortium (CSBC), Shoulders Lab

Web page: https://nextseek.mit.edu/

Advanced Projects list for this Sample with search and filtering

Shoulders Lab

Shoulders Lab Collagen Publications

Programme: NExtSEEK

Public web page: Not specified

Organisms: Not specified

Advanced Investigations list for this Sample with search and filtering

Shoulders Lab Individual Publications

Shoulders Lab

No description specified

Submitter: Charles Demurjian

Studies: Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p..., In vivo directed evolution of an ultrafast Rubisco from a semianaerobic ...

Assays: Cell Imaging - Data Linked, Gene Expression Analysis - Data Linked, LC - MS/MS (Proteomics) - Data Linked, Library Creation - Metadata, Proteomics Analysis - Data Linked, RNA Extraction - Metadata, Short Read Sequencing - Data Linked, iPSC Culture and Chondronoid Formation - Metadata

Snapshots: No snapshots

Created: 3rd Jun 2025 at 15:39, Last updated: 10th Jun 2025 at 15:16

Advanced Studies list for this Sample with search and filtering

Human cartilage model of the precocious osteoarthritis-inducing COL2A1 p.R719C reveals pathology-driving matrix defects and a failure of the ER proteostasis network to recognize the defective procollagen-II

Shoulders Lab

Kathryn M. Yammine, Sophia Mirda Abularach, Michael Xiong, Seo-yeon Kim, Agata A. Bikovtseva, Vincent L. Butty, Richard P. Schiavoni, John F. Bateman, Shireen R. Lamandé, and Matthew D. Shoulders

A dbGaP Submission is underway and metadata will be updated at the completion of submission. The remaining of the data and metadata are available here.