Presentations

Presentation by Robert Pool at the SysMO Conference (Feb 2013 in Berlin)

Summary 1.1 modifying TFinfer to model the TFs using ON/OFF switches (fast response model), 1.2 trying to infer metabolites effect using a joint gene-tf-metabolite model, 2 analysing aerbiosis data using a similar model, 3 clustering genes for extending the EC network to obtain better fits to the data (feedback loop).

Presented by MARTIN SCHARM at SySMO PALs meeting 29-30 November 2012 in Heidelberg

An overview of the RDF work being done with SEEK, given at the PALs meeting, November 2012. It gives a high level explanation of what RDF is, why its useful and can be used for filtering and finding out information about the data in SEEK. This talk proceeded an interactive session where the PALs came up with 20 questions, to help us refine our model and prioritise what we describe.

The acetone-butanol-ethanol (ABE) fermentation of Clostridium acetobutylicum attracts new attention because it provides a potential alternative for the synthesis of value added chemicals to petroleum and other fossil reserves. This fermentative metabolic process comprises two distinct metabolic states that differ in their product spectrum. Growing on starch or sugars the predominant fermentation products are acetate and butyrate during acidogenesis (high pH). In contrast, C. acetobutylicum produces ...

This document is a summary of the SysMO-DB PALs meeting on the 29-30 November 2012

Issues and considerations for data management as SysMO projects approach the end of their funding

Presented by Ron Henkel at SySMO PALs meeting 29-30 November 2012 in Heidelberg

This talk was presented at the IEEE e-Science conference, Chicago, USA (8-12 October 2012). http://www.ci.uchicago.edu/escience2012/ It describes the latest developments in RightField for both semantic data annotation and extraction to RDF.

April, 5th, 2011

July, 8th, 2011

December, 22th, 2011

September, 13th, 2012

Presented by Tobias Czauderna from Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) in Gatersleben at the SysMO PALs Meeting Heidelberg,29-11-2012

Olga's presentation at SySMO PALs meeting 29 – 30 November 2012, Heidelberg

SEEK at ICSB 2012 (presented by Olga Krebs)

Carole Goble's presentation at the SysMO Evaluation conference in Tenerife - May 2012.

Presented at the annual PALs meeting in Rostock

Presented by Olga Krebs at All Hands PALs meeting on 21-22 of May 2012 in Warnemünde/Rostock

Presentation of JERM templates at SEEK Users WS 2012 in Berlin (Olga Krebs)

An overview of the SEEK for the HCLS Systems Biology Task force meeting

Presentation on project progress - meeting Berlin April 5th 2012

This presentation gives an overview of the way we structure and share data in the SEEK using JERM templates, and how we use the ISA hierarchy of Investigations, Studies, and Assays to associate experiments and data sets together. These slides were presented at the SEEK Users meeting in Berlin 2012.