Presentations

Katy Wolstencroft's talk at the "3rd Eagle Genomics Symposium:Will Big Data and Bigger Cuts Cripple Bioinformatics?", presented on 21st March 2013.

http://www.eaglegenomics.com/2013/01/eagles-third-symposium-how-the-efficient-bioinformatician-reduces-rd-costs/

The talk presented by Carole Goble and Wolfgang Mueller at the SysMO evaluation conference 2013 in Berlin.

This presentation reports about the results from an investigation of a ClosTron-mutant lacking CoA-transferase activity. Using our two-population model developed for the wild type of C. acetobutylicum, we analyse the changes in the formation of products caused by that mutation. In particular, we focus on the investigation of the acid re-assimilation after the initiation of the pH shift. Our comparison of experimental data and simulation unravels that an CoA-independent re-assimilation mechanism ...

Presentation by Michael Ederer and Klaas Hellingwerf at the SysMO Conference 2013 (Feb 2013, Berlin)

Presentation by Robert Pool at the SysMO Conference (Feb 2013 in Berlin)

Summary 1.1 modifying TFinfer to model the TFs using ON/OFF switches (fast response model), 1.2 trying to infer metabolites effect using a joint gene-tf-metabolite model, 2 analysing aerbiosis data using a similar model, 3 clustering genes for extending the EC network to obtain better fits to the data (feedback loop).

Presented by MARTIN SCHARM at SySMO PALs meeting 29-30 November 2012 in Heidelberg

An overview of the RDF work being done with SEEK, given at the PALs meeting, November 2012. It gives a high level explanation of what RDF is, why its useful and can be used for filtering and finding out information about the data in SEEK. This talk proceeded an interactive session where the PALs came up with 20 questions, to help us refine our model and prioritise what we describe.

The acetone-butanol-ethanol (ABE) fermentation of Clostridium acetobutylicum attracts new attention because it provides a potential alternative for the synthesis of value added chemicals to petroleum and other fossil reserves. This fermentative metabolic process comprises two distinct metabolic states that differ in their product spectrum. Growing on starch or sugars the predominant fermentation products are acetate and butyrate during acidogenesis (high pH). In contrast, C. acetobutylicum produces ...

This document is a summary of the SysMO-DB PALs meeting on the 29-30 November 2012

Issues and considerations for data management as SysMO projects approach the end of their funding

Presented by Ron Henkel at SySMO PALs meeting 29-30 November 2012 in Heidelberg

This talk was presented at the IEEE e-Science conference, Chicago, USA (8-12 October 2012). http://www.ci.uchicago.edu/escience2012/ It describes the latest developments in RightField for both semantic data annotation and extraction to RDF.

April, 5th, 2011

July, 8th, 2011

December, 22th, 2011

September, 13th, 2012

Presented by Tobias Czauderna from Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) in Gatersleben at the SysMO PALs Meeting Heidelberg,29-11-2012

Olga's presentation at SySMO PALs meeting 29 – 30 November 2012, Heidelberg

SEEK at ICSB 2012 (presented by Olga Krebs)

Carole Goble's presentation at the SysMO Evaluation conference in Tenerife - May 2012.