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173 Assays visible to you, out of a total of 173

SDtoLD 260410

BioDare1

SDtoLD 260410

Property	Value
BioDare ID	13982031569136
Author	Laura Dixon
Institution	University of Edinburgh
License	CC_BY

Description

pTOC plate 0683 pCAB plate0684 LHY plate 0685 control plate 0686 TOC plate0687 pLHY plate 0688

Purpose

Re-entrainment dynamics during the transition between light:dark cycles with different photoperiods, comparing Arabidopsis thaliana and Ostreococcus tauri. This expt in O. tauri ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Dixon Laura

Study: Dixon et al. (2014)

Organisms: Ostreococcus tauri

SOPs: No SOPs

Data files: BioDare_metadata, LHY 0685 normalised, Ot data summary for BioDare 2014 v3.1, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list, TOC normalised, control plate 0686Derandomized, pCAB plate0684Derandomized, pLHY normalised, pTOC 0683 normalised, summary

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:55, Last updated: 18th Jun 2026 at 12:59

Edwards et al. (2010); WT in different light conditions.

BioDare1

Edwards et al. (2010); WT in different light conditions.

Property	Value
BioDare ID	13227622661196
Author	Edwards, K.D.
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'Quantitative analysis of regulatory flexibility under changing environmental conditions.' by: Edwards, K.D..

Theory suggested that multiple loops contribute the flexibility for molecular rhythms to track multiple phases ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Kieron D Edwards

Study: Edwards et al. (2010)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list, edwards.1, effectofphotoperiods-edwards2010

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:52, Last updated: 18th Jun 2026 at 12:54

Effects of GA on clock in WT and prr9prr7

BioDare1

Effects of GA on clock in WT and prr9prr7

Property	Value
BioDare ID	3838
Author	Daniel Seaton
Institution	University of Edinburgh
License	CC_BY

Description

Purpose

To test whether GA has any effect on circadian clock period in the WT, and whether this effect is altered in the prr9prr7 mutant.

Comments

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Chew Yin Hoon

Study: Chew et al. (2022)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 300915_Ham2_GA_p97_experiment, BioDare_metadata, Readme, Sample_list, metamorph_output_abridged.2

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:50, Last updated: 18th Jun 2026 at 12:52

Flis et al. TiMet clock gene comparison across photoperiods

BioDare1

Flis et al. TiMet clock gene comparison across photoperiods

Property	Value
BioDare ID	3967
Author	Anna Flis
Institution	Max Planck Inst. Golm
License	CC_BY

Description

Literature data from: 'Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis' by: Anna Flis.

Col plants were grown in soil under 6, 8, 12 and 18h photoperiod for 21 days, and ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2016)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Readme, Sample_list, TiMet 1.2 - Photoperiod exp - transcripts AJMv2...

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:49, Last updated: 18th Jun 2026 at 12:50

Q-PCR LD (12:12) 17C LHY

BioDare1

Q-PCR LD (12:12) 17C LHY

Property	Value
BioDare ID	3492
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Literature data from: 'Temp' by: Aurora Pinas-Fernandez.

Wild-type and clock-mutant seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees, every 2h, for 24h.

Purpose

...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-0Suc LHY by Aurora, Andrew's edit, 17C-LD-0Suc LHY by Aurora, Andrew's edit for Bi..., BioDare_metadata, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:47, Last updated: 18th Jun 2026 at 12:48

McWatters A.t. Col-0 WT clock RNA timeseries

BioDare1

McWatters A.t. Col-0 WT clock RNA timeseries

Property	Value
BioDare ID	3488
Author	Harriet G. McWatters
Institution	University of Oxford
License	CC_BY

Description

Literature data from: 'Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.' by: Harriet G. McWatters.

data are col0 8 d seedlings grown on sucrose in either LD 12:12 at 20 oC or WC 27:12 in LL. Gene ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, McWatters RNA data, McWatters RNA data.1, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:45, Last updated: 18th Jun 2026 at 12:47

Clock gene RNAs under RD-RR in clock mutants, expt 4

BioDare1

Clock gene RNAs under RD-RR in clock mutants, expt 4

Property	Value
BioDare ID	13228357183121
Author	Locke
Institution
License

Description

Literature data from: 'Extension of a genetic network model by iterative experimentation and mathematical analysis.' by: Locke.

First, heroic large-scale RNA profile screen by real-time qPCR in 96-well format, by Megan Southern in 2005. Experiment 4 of 4.

Purpose

Testing effects of clock ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Expt4 for BioDare upload, MMS qRT-PCR primers and toc1-2 control, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:38, Last updated: 18th Jun 2026 at 12:45

Clock gene RNAs under RD-RR in clock mutants, expt 3

BioDare1

Clock gene RNAs under RD-RR in clock mutants, expt 3

Property	Value
BioDare ID	13228357055348
Author	Locke
Institution
License

Description

Literature data from: 'Extension of a genetic network model by iterative experimentation and mathematical analysis.' by: Locke.

First, heroic large-scale RNA profile screen by real-time qPCR in 96-well format, by Megan Southern in 2005. Experiment 3 of 4.

Purpose

Testing effects of clock ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Expt3 for BioDare upload.1, MMS qRT-PCR primers and toc1-2 control, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:36, Last updated: 18th Jun 2026 at 12:38

Clock gene RNAs under RD-RR in clock mutants, expt 2

BioDare1

Clock gene RNAs under RD-RR in clock mutants, expt 2

Property	Value
BioDare ID	13227619871305
Author	Locke
Institution
License

Description

Literature data from: 'Extension of a genetic network model by iterative experimentation and mathematical analysis.' by: Locke.

First, heroic large-scale RNA profile screen by real-time qPCR in 96-well format, by Megan Southern in 2005. Experiment 2 of 4.

Purpose

Testing effects of clock ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Expt2 for BioDare upload.1, MMS qRT-PCR primers and toc1-2 control, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:34, Last updated: 18th Jun 2026 at 12:35

Clock gene RNAs under RD-RR in clock mutants, expt 1

BioDare1

Clock gene RNAs under RD-RR in clock mutants, expt 1

Property	Value
BioDare ID	13228298288040
Author	Locke
Institution	University of Warwick
License

Description

Literature data from: 'Extension of a genetic network model by iterative experimentation and mathematical analysis.' by: Locke.

First, heroic large-scale RNA profile screen by real-time qPCR in 96-well format, by Megan Southern in 2005. Data are noisy (especially ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 7.7 timecourse 1&2 reformatted for BioDare 2 De..., BioDare_metadata, Expt1 for BioDare upload.2, MMS qRT-PCR primers and toc1-2 control, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:31, Last updated: 18th Jun 2026 at 12:33

Q-PCR LD (12:12) 17C ELF3

BioDare1

Q-PCR LD (12:12) 17C ELF3

Property	Value
BioDare ID	12962294335805
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h sample ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OffSuc-ELF3(JF261-262), 17C-LD-OffSuc-ELF3(JF588-589), 2011-12 ELF3 LD Primers 260-261.1, BioDare_metadata, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:28, Last updated: 18th Jun 2026 at 12:30

Q-PCR LD (12:12) 17C ELF4

BioDare1

Q-PCR LD (12:12) 17C ELF4

Property	Value
BioDare ID	12962296599986
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OffSuc-ELF4, 2011-12 ELF4 LD, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:25, Last updated: 18th Jun 2026 at 12:27

Q-PCR LD (12:12) 17C CAB2

BioDare1

Q-PCR LD (12:12) 17C CAB2

Property	Value
BioDare ID	13228354371807
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 2011-12 CAB2 LD, BioDare_metadata, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:23, Last updated: 18th Jun 2026 at 12:25

Q-PCR LD (12:12) 17C LUX

BioDare1

Q-PCR LD (12:12) 17C LUX

Property	Value
BioDare ID	12820610913763
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-prr7-3, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 LUX LD.1, BioDare_metadata, Plt15&16-lux-200710-Prog, Plt17-lux-260710-Prog, Plt18-lux-280710-Prog, Plt19&20-lux-120810-Prog, Plt21-lux-190810-Prog, Readme, STANDARD_DATAFILE.1, STANDARD_RAWDATAFILE.1, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:18, Last updated: 18th Jun 2026 at 12:23

Q-PCR LD (12:12) 17C GI

BioDare1

Q-PCR LD (12:12) 17C GI

Property	Value
BioDare ID	12820606741450
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-prr7-3, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 GI LD.2, BioDare_metadata, Plate15&16-GI-200710-Prog, Plate17-GI-260710-Prog, Plate18-GI-280710-Prog, Plate19&21-GI-090810-Prog, Plate21-GI-180810-Prog, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 12:13, Last updated: 18th Jun 2026 at 12:18

Q-PCR LD (12:12) 17C TOC1

BioDare1

Q-PCR LD (12:12) 17C TOC1

Property	Value
BioDare ID	12820611587928
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-prr7-3, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 TOC1 LD, BioDare_metadata, Plt15&16-TOC-200710-Prog.1, Plt15&16-TOC-200710-Prog.1, Plt17-TOC-260710-Prog, Plt18-TOC-280710-Prog, Plt19&20-TOC-090810-Prog, Plt21-TOC-180810-Prog, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:32, Last updated: 18th Jun 2026 at 12:12

Q-PCR LD (12:12) 17C PRR5

BioDare1

Q-PCR LD (12:12) 17C PRR5

Property	Value
BioDare ID	12820611188065
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-prr7-3, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 PRR5 LD, BioDare_metadata, Plt15&16-PRR5-200710-Prog, Plt17-PRR5-260710-Prog, Plt18-PRR5-270710-Prog, Plt19&20-PRR5-020810-Prog, Plt21-PRR5-180810-Prog, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:26, Last updated: 18th Jun 2026 at 11:32

Q-PCR LD (12:12) 17C PRR7

BioDare1

Q-PCR LD (12:12) 17C PRR7

Property	Value
BioDare ID	12820611319996
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 PRR7 LD, BioDare_metadata, Plt15&16-PRR7-190710-Prog1, Plt17-PRR7-260710-Prog, Plt18-PRR7-080810-Prog, Plt19&20-PRR7-050810-Prog, Plt21-PRR7-190810-Prog, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:21, Last updated: 18th Jun 2026 at 11:25

Q-PCR LD (12:12) 17C PRR9

BioDare1

Q-PCR LD (12:12) 17C PRR9

Property	Value
BioDare ID	12820610743262
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-lhyccagi, 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 PRR9 LD.2, BioDare_metadata, Plt15&16-PRR9-190710-Prog, Plt17-PRR9-260710-Prog, Plt18-PRR9-270710-Prog, Plt19&20-PRR9-020810-Prog, Readme, STANDARD_DATAFILE.2, STANDARD_RAWDATAFILE.2, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:16, Last updated: 18th Jun 2026 at 11:20

Q-PCR LD (12:12) 17C CCA1

BioDare1

Q-PCR LD (12:12) 17C CCA1

Property	Value
BioDare ID	12820611467827
Author	Aurora Pinas-Fernandez
Institution	University of Edinburgh
License	CC_BY

Description

Seedlings were entrained for 7 days at 22C in 12:12 white light. Then shifted to 17C 12:12 white light. Samples were collected on the 6th day at 17 degrees.

Purpose

Experiment carry out to reparameterize the clock off Succrose

Comments

Sample time 24h. 24h ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: 17C-LD-OS-wt-cca1, 17C-LD-OS-wt-lhy21, 17C-LD-OS-wt-prr-gi-lc-toc.1, 2011-12 CCA1 LD, BioDare_metadata, Plt15&16-CCA1-190710-Prog, Plt18-CCA1-270710-Prog, Plt19&20-CCA1-020810-Prog, Plt21-CCA1-180810-Prog, Readme, STANDARD_DATAFILE, STANDARD_RAWDATAFILE, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:11, Last updated: 18th Jun 2026 at 11:16

TiMet WP1.1 WS seedling vs rosette

BioDare1

TiMet WP1.1 WS seedling vs rosette

Property	Value
BioDare ID	2843
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology
License	CC_BY

Description

Ws in biological duplicates, from diurnal cycle (12L/12D) with different plants age: 9 and 20 days. Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells.

Purpose

Compare clock important genes transcript levels in seedlings ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Primers_TiMet_AnnaFlis2013, RNA LD seedling vs rosette, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:09, Last updated: 18th Jun 2026 at 11:11

TiMet WP1.1 qRT-PCR elf3 LD

BioDare1

TiMet WP1.1 qRT-PCR elf3 LD

Property	Value
BioDare ID	2842
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology
License	CC_BY

Description

WT and elf3-4 mutants, in biological duplicates, diurnal light, harvest every 2 hours Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells.

Purpose

TiMet focuses on an important and general biological problem – how are plant ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Primers_TiMet_AnnaFlis2013, RNA ELF3 LD, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:07, Last updated: 18th Jun 2026 at 11:09

TiMet WP1.1 qRT-PCR LD to LL and LD

BioDare1

TiMet WP1.1 qRT-PCR LD to LL and LD

Property	Value
BioDare ID	2841
Author	Anna Flis
Institution	MPI of Molecular Plant Physiology, Golm, Germany
License	CC_BY

Description

2 WT (Col, Ws) and 5 clock mutants, in biological duplicates, from three conditions: Diurnal cycle (12L/12D), Extended night (DD), Extended light (LL), harvest every 2 hours. Numbers are in transcript copy per cell, obtained ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Flis Anna

Study: Flis et al. (2015)

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Primers_TiMet_AnnaFlis2013, RNA LD to Both LL and DD, Readme, Sample_list

Snapshots: No snapshots

Created: 18th Jun 2026 at 11:06, Last updated: 18th Jun 2026 at 11:07

Assays

Filters ×

SDtoLD 260410

Description

Purpose

Edwards et al. (2010); WT in different light conditions.

Description

Effects of GA on clock in WT and prr9prr7

Description

Purpose

Comments

Flis et al. TiMet clock gene comparison across photoperiods

Description

Q-PCR LD (12:12) 17C LHY

Description

Purpose

McWatters A.t. Col-0 WT clock RNA timeseries

Description

Clock gene RNAs under RD-RR in clock mutants, expt 4

Description

Purpose

Clock gene RNAs under RD-RR in clock mutants, expt 3

Description

Purpose

Clock gene RNAs under RD-RR in clock mutants, expt 2

Description

Purpose

Clock gene RNAs under RD-RR in clock mutants, expt 1

Description

Q-PCR LD (12:12) 17C ELF3

Description

Purpose

Comments

Q-PCR LD (12:12) 17C ELF4

Description

Purpose

Comments

Q-PCR LD (12:12) 17C CAB2

Description

Purpose

Comments

Q-PCR LD (12:12) 17C LUX

Description

Purpose

Comments

Q-PCR LD (12:12) 17C GI

Description

Purpose

Comments

Q-PCR LD (12:12) 17C TOC1

Description

Purpose

Comments

Q-PCR LD (12:12) 17C PRR5

Description

Purpose

Comments

Q-PCR LD (12:12) 17C PRR7

Description

Purpose

Comments

Q-PCR LD (12:12) 17C PRR9

Description

Purpose

Comments

Q-PCR LD (12:12) 17C CCA1

Description

Purpose

Comments

TiMet WP1.1 WS seedling vs rosette

Description

Purpose

TiMet WP1.1 qRT-PCR elf3 LD

Description

Purpose

TiMet WP1.1 qRT-PCR LD to LL and LD

Description

Filters