Investigations

2 Investigations visible to you, out of a total of 10

Absolute units in Arabidopsis clock models up to U2020.3

Millar group

The dataset presents mathematical models of the gene regulatory network of the circadian clock, in the plant Arabidopsis thaliana. The work is published in Urquiza-Garcia and Millar, Testing the inferred transcription rates of a dynamic, gene network model in absolute units, In Silico Plants, 2021.

Starting from the P2011 model, this project corrects theoretical issues (EC steady state binding assumption) to form an intermediate model (first version U2017.1; published as U2019.1) model, rescales ...

Submitter: Andrew Millar

Studies: P2011, U2019 and U2020 models and modelling resources, Rescaling the P2011 model to match RNA data

Assays: P2011.1.2, Reproducibility tool set, TiMet RNA timeseries data and starting models, U2019/U2020 models

Snapshots: Snapshot 1, Snapshot 2, Snapshot 3

DOI: 10.15490/fairdomhub.1.investigation.170.3

Created: 6th Dec 2017 at 21:38, Last updated: 9th Sep 2021 at 12:53

Urquiza Garcia, Uriel

PlaSMo model repository

Collection of models submitted to PLaSMo by Uriel Urquiza Garcia and automatically transferred to FAIRDOM Hub.

Submitter: BioData SynthSys

Studies: F2014.1 - PLM_1030, PLM_67v3withTempPulse - PLM_81

Assays: F2014.1 - PLM_1030, version 1, PLM_67v3withTempPulse - PLM_81, version 1

Snapshots: No snapshots

Created: 10th Jan 2019 at 16:37, Last updated: 20th Dec 2019 at 12:39

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