Carbon Core deFBA Model Version 1
Simulate Model on Copasi
Simulate Model on JWSA small model representing the core carbon network in each cell. For more detail on the model creation see [1]. The model is written in SBML using the RAM extension for use in deFBA. Compatible python software for simulation can be found at https://tinyurl.com/yy8xu4v7
[1] S. Waldherr, D. A. Oyarzún, A. Bockmayr. Dynamic optimization of metabolic networks coupled with gene expression. In: Journal of Theoretical Biology, 365(0): 469 - 485.
SEEK ID: https://fairdomhub.org/models/557?version=1
1 item is associated with this Model:-
carbon_core_with_O2.xml (XML document - 44.5 KB)
Organism: Not specified
Model type: Stoichiometric model
Model format: SBML
Execution or visualisation environment: Not specified
Model image: No image specified
Export PNG
Creators and Submitter
Views: 2094 Downloads: 106 Runs: 0
Created: 11th Mar 2019 at 14:44
Last updated: 11th Mar 2019 at 15:12
TagsThis item has not yet been tagged.
AttributionsNone
Version History
Version 1 (earliest) Created 11th Mar 2019 at 14:44 by Henning Lindhorst
No revision comments
Related items
Projects: ROBUSTYEAST
Institutions: Otto-von-Guericke University Magdeburg
https://orcid.org/0000-0001-9899-2463
Projects: ROBUSTYEAST
Institutions: Otto-von-Guericke University Magdeburg
The main objective of the ERANET proposal Systems Biology Applications - ERASysAPP (app = application = translational systems biology) is to promote multidimensional and complementary European systems biology projects, programmes and research initiatives on a number of selected research topics. Inter alia, ERASysAPP will initiate, execute and monitor a number of joint transnational calls on systems biology research projects with a particular focus on applications - or in other words so called ...
Projects: SysVirDrug, SysMilk, SysMetEx, MetApp, IMOMESIC, WineSys, CropClock, SYSTERACT, XyloCut, RootBook, ROBUSTYEAST, LEANPROT, ErasysApp Funders
Web page: https://www.cobiotech.eu/about-cobiotech/erasysapp
Microbial strains used in biotechnological industry need to produce their biotechnological products at high yield and at the same time they are desired to be robust to the intrinsic nutrient dynamics of large-scale bioreactors, most noticeably to transient limitations of carbon sources and oxygen. The engineering principles for robustness of metabolism to nutrient dynamics are however not yet well understood. The ROBUSTYEAST project aims to reveal these principles for microbial strain improvement ...
Programme: ERASysAPP
Public web page: Not specified
