Carbon Core deFBA Model
Version 1

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A small model representing the core carbon network in each cell. For more detail on the model creation see [1]. The model is written in SBML using the RAM extension for use in deFBA. Compatible python software for simulation can be found at

[1] S. Waldherr, D. A. Oyarzún, A. Bockmayr. Dynamic optimization of metabolic networks coupled with gene expression. In: Journal of Theoretical Biology, 365(0): 469 - 485.


1 item is associated with this Model:
  • carbon_core_with_O2.xml (XML document - 44.5 KB) Download

Organism: Not specified

Model type: Stoichiometric model

Model format: SBML

Execution or visualisation environment: Not specified

DOI: 10.15490/fairdomhub.1.model.557.1

Model image: No image specified

help Creators and Submitter
Lindhorst, H., & Waldherr, S. (2019). Carbon Core deFBA Model. FAIRDOMHub.

Views: 859   Downloads: 62

Created: 11th Mar 2019 at 15:44

Last updated: 11th Mar 2019 at 16:12

Last used: 16th Apr 2021 at 18:26

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