Spatio-temporal dynamics of Rab5 domains on the membrane of early endosomes
Version 1

LightningSimulate Model on JWS BuildDownload ZoomView content

This model describes a core process during endocytosis. Intracellular vesicles called early endosomes contain the endocytosed cargo, e.g. signaling components like growth factors and RTKs, pathogens like viruses and nutrients like iron in transferrin. Early endosomes form an interacting pool of thousands of vesicles and jointly constitute the sorting and transport machinery in the endocytic pathway. Together with the cargo, membrane components travel to other compartments of the pathway which perform distinct functions. Hence, the functionality of the membrane components needs to be controlled dynamically in response to their instantaneous position within the pathway. This key role is taken by Rab GTPases. Early endosomes are controlled by the membrane organizer Rab5:GTP. Rab5:GTP recruits specific effector proteins which perform the specific functions of early endosomes. Here we model the recruitment, activation, hydrolysis and solubilization of Rab5:GTP. This model includes the spatial interaction terms. Model derivation and results of analytical and numerical analysis are reported in L. Brusch, P. Del Conte-Zerial, Y. Kalaidzidis, J. Rink, B. Habermann, M. Zerial, and A. Deutsch, Protein Domains of GTPases on Membranes: Do They Rely on Turings Mechanism? In A. Deutsch, L. Brusch, H. Byrne, G. de Vries, H. Herzel (Eds): Mathematical Modeling of Biological Systems, pp. 35-48 (Birkhaeuser, Boston, 2007).

SEEK ID: https://fairdomhub.org/models/322?version=1

1 item (and an image) are associated with this Model:
  • Rab5PDE.xml (XML document - 18.5 KB) Zoom Download

Organism: Rattus norvegicus

Model type: Partial differential equations (PDE)

Model format: SBML

Execution or visualisation environment: Not specified

Model image: (Click on the image to zoom)

Help
help Contributor and Creators
Activity

Views: 262   Downloads: 28

Created: 8th Jun 2018 at 18:03

Last updated: 8th Jun 2018 at 18:03

Last used: 19th Oct 2018 at 17:09

Related items

Powered by
Seek new full
(v.1.7.0)
Copyright © 2008 - 2018 The University of Manchester and HITS gGmbH