Ito, S.
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Collection of experiments created by Ito, S. on the original BioDare and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/819
Projects: BioDare1
Investigation position:
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Created: 19th Jun 2026 at 15:09
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experimental data that were previously hosted on the original version of BioDare (biodare.ed.ac.uk), which opened in 2009, please see https://doi.org/10.1007/978-1-4939-0700-7_2. BioDare was designed as a repository of rhythmic biological data, especially for 24-hour circadian rhythms, with specialised analytical routines for period, phase and amplitude estimation on each data timeseries. Most rhythms tested were measured using gene expression, either directly as RNA levels, or indirectly using ...
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: https://biodare2.ed.ac.uk
Start date: 7th Jul 2006
End date: 21st Dec 2017
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Ito, S.
Assays: Ito 2007 wt LD PRR9 protein, Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, pr...
Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, prr5, toc1;prr5
| Property | Value |
|---|---|
| BioDare ID | 13790751359110 |
| Author | Ito, S. |
| Institution | Nagoya University |
| License | CC_BY |
Description
Purpose
In Arabidopsis thaliana, many circadian clock-associated genes have been identified. Among them, the eveningexpressed TOC1 (TIMING OF CAB EXPRESSION 1) gene plays a role by forming a transcriptional feedback core loop ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Ito, S.
Study: Unpublished
Ito 2007 wt LD PRR9 protein
| Property | Value |
|---|---|
| BioDare ID | 13227547204752 |
| Author | Ito S |
| Institution | Nagoya University |
| License | CC_BY |
Description
Purpose
PRR9 mRNA and protein were measured under the same conditions. This file has PRR9 protein only.
Comments
This PRR9 protein profile rises more slowly than the FLAG-tagged PRR9 protein in Nakamichi Plant Cell 2010.
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Ito, S.
Study: Unpublished
Ito PRR9 PCP 07 (from BioDare)
Creator: Ito S
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Ito S
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Ito S
Submitter: Daniel Thedie
Ito2007_wt_LD_PRR9_protein (from BioDare)
Creator: Ito S
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Ito S
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Ito S
Submitter: Daniel Thedie
Readme file
Creator: Ito S
Submitter: Daniel Thedie
ito2008 (from BioDare)
Creator: Ito, S.
Submitter: Daniel Thedie
STANDARD_DATAFILE (from BioDare)
Creator: Ito, S.
Submitter: Daniel Thedie
STANDARD_RAWDATAFILE (from BioDare)
Creator: Ito, S.
Submitter: Daniel Thedie
ito2008 (from BioDare)
Creator: Ito, S.
Submitter: Daniel Thedie
List of samples used in the assay (extracted from original BioDare metadata and converted to csv)
Creator: Ito, S.
Submitter: Daniel Thedie
Original BioDare metadata, converted to json format
Creator: Ito, S.
Submitter: Daniel Thedie
Readme file
Creator: Ito, S.
Submitter: Daniel Thedie
