Graf, Alexandra
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Collection of models submitted to PLaSMo by Alexandra Graf and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/261
Projects: PlaSMo model repository
Investigation position:
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Created: 10th Jan 2019 at 16:37
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Cytoscape silqueue specific protein detection
Originally submitted to PLaSMo on 2012-03-02 12:44:13
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 silqueue specific protein detection network - PLM_59, version 1
Cytoscape shoot specific diurnal transcript oscillation.
Originally submitted to PLaSMo on 2012-03-02 12:42:30
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 shoot specific diurnal transcript oscillation network - PLM_5...
The seed network, uploaded as a test from Cytoscape
Originally submitted to PLaSMo on 2012-02-24 11:41:50
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 seed network - PLM_53, version 1, TiMet 2011 seed network - PLM_53, version 2
Test for root network
Originally submitted to PLaSMo on 2012-02-27 14:24:59
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
PP interaction network exported from Cytoscape in XGMML
Originally submitted to PLaSMo on 2012-03-02 12:32:33
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 PP interaction network - PLM_56, version 1
Trial upload of the pollen netwrok from TiMet
Originally submitted to PLaSMo on 2012-02-27 12:17:46
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 Pollen network - PLM_54, version 1, TiMet 2011 Pollen network - PLM_54, version 2
TiMet flower specific protein detection network
Originally submitted to PLaSMo on 2012-03-02 12:39:54
Submitter: BioData SynthSys
Investigation: Graf, Alexandra
Assays: TiMet 2011 flower specific protein detection network - PLM_57, version 1
TiMet flower specific protein detection network
Originally submitted to PLaSMo on 2012-03-02 12:39:54
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
Trial upload of the pollen netwrok from TiMet
Originally submitted to PLaSMo on 2012-02-27 12:17:46
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
Trial upload of the pollen netwrok from TiMet
Version Comments
Live pollen upload test
Originally submitted to PLaSMo on 2012-02-27 12:17:46
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
PP interaction network exported from Cytoscape in XGMML
Originally submitted to PLaSMo on 2012-03-02 12:32:33
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
Test for root network
Originally submitted to PLaSMo on 2012-02-27 14:24:59
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
The seed network, uploaded as a test from Cytoscape
Version Comments
Saving second/third version as a live test
Originally submitted to PLaSMo on 2012-02-24 11:41:50
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
The seed network, uploaded as a test from Cytoscape
Version Comments
Uploading new version for testing
Originally submitted to PLaSMo on 2012-02-24 11:41:50
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
Cytoscape shoot specific diurnal transcript oscillation.
Originally submitted to PLaSMo on 2012-03-02 12:42:30
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
Cytoscape silqueue specific protein detection
Originally submitted to PLaSMo on 2012-03-02 12:44:13
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Graf, Alexandra
