Beaton, Martin

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...

Neuronal musch signalling sbml diagram

Originally submitted to PLaSMo on 2012-03-05 12:33:43

Test by Martin for simileXML

Originally submitted to PLaSMo on 2012-03-08 11:39:23

sbgn model of signalling

Originally submitted to PLaSMo on 2012-03-05 11:53:41

SBGN model of glycolysis

Originally submitted to PLaSMo on 2012-03-05 11:43:15

This is the representation of major parts of the central metabolism in monocotyledon plants. The information has been derived from the MetaCrop [2] database, a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathways, reactions, locations, transport processes, and moreOriginally submitted to PLaSMo on 2012-03-05 11:52:18

This is the representation of major parts of the central metabolism in monocotyledon plants. The information has been derived from the MetaCrop [2] database, a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathways, reactions, locations, transport processes, and moreOriginally submitted to PLaSMo on 2012-03-05 11:52:18

SBGN model of glycolysis

Originally submitted to PLaSMo on 2012-03-05 11:43:15

sbgn model of signalling

Originally submitted to PLaSMo on 2012-03-05 11:53:41

Test by Martin for simileXML

Originally submitted to PLaSMo on 2012-03-08 11:39:23

Test by Martin for simileXML

Version Comments

Version 2, the product of many seconds of research..

Neuronal musch signalling sbml diagram

Originally submitted to PLaSMo on 2012-03-05 12:33:43

Originally submitted model file for PLaSMo accession ID PLM_63, version 1

Originally submitted model file for PLaSMo accession ID PLM_62, version 1

Originally submitted model file for PLaSMo accession ID PLM_60, version 1

Originally submitted model file for PLaSMo accession ID PLM_61, version 1