Beaton, Martin
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Collection of models submitted to PLaSMo by Martin Beaton and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/254
Projects: PlaSMo model repository
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Created: 10th Jan 2019 at 16:37
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Neuronal musch signalling sbml diagram
Originally submitted to PLaSMo on 2012-03-05 12:33:43
Submitter: BioData SynthSys
Investigation: Beaton, Martin
Test by Martin for simileXML
Originally submitted to PLaSMo on 2012-03-08 11:39:23
Submitter: BioData SynthSys
Investigation: Beaton, Martin
Assays: Martin test - PLM_65, version 1, Martin test - PLM_65, version 2
sbgn model of signalling
Originally submitted to PLaSMo on 2012-03-05 11:53:41
Submitter: BioData SynthSys
Investigation: Beaton, Martin
Assays: Insulin-like growth factor signaling - PLM_62, version 1
SBGN model of glycolysis
Originally submitted to PLaSMo on 2012-03-05 11:43:15
Submitter: BioData SynthSys
Investigation: Beaton, Martin
This is the representation of major parts of the central metabolism in monocotyledon plants. The information has been derived from the MetaCrop [2] database, a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathways, reactions, locations, transport processes, and moreOriginally submitted to PLaSMo on 2012-03-05 11:52:18
Submitter: BioData SynthSys
Investigation: Beaton, Martin
This is the representation of major parts of the central metabolism in monocotyledon plants. The information has been derived from the MetaCrop [2] database, a manually curated repository of high quality information concerning the metabolism of crop plants. This includes pathways, reactions, locations, transport processes, and moreOriginally submitted to PLaSMo on 2012-03-05 11:52:18
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
SBGN model of glycolysis
Originally submitted to PLaSMo on 2012-03-05 11:43:15
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
Study: Glycolysis SBGN - PLM_60
sbgn model of signalling
Originally submitted to PLaSMo on 2012-03-05 11:53:41
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
Test by Martin for simileXML
Originally submitted to PLaSMo on 2012-03-08 11:39:23
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
Study: Martin test - PLM_65
Test by Martin for simileXML
Version Comments
Version 2, the product of many seconds of research..
Originally submitted to PLaSMo on 2012-03-08 11:39:23
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
Study: Martin test - PLM_65
Neuronal musch signalling sbml diagram
Originally submitted to PLaSMo on 2012-03-05 12:33:43
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Beaton, Martin
Originally submitted model file for PLaSMo accession ID PLM_63, version 1
Creators: BioData SynthSys, Martin Beaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBGN-ML PD
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_62, version 1
Creators: BioData SynthSys, Martin Beaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBGN-ML PD
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_60, version 1
Creators: BioData SynthSys, Martin Beaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBGN-ML PD
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_61, version 1
Creators: BioData SynthSys, Martin Beaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBGN-ML PD
Environment: Not specified
