Events

Here we collect all the presentations, hands on instructions and documentation for Kinetics on the move Workshop on Data for Computational Modeling

The second project review meeting took place on May 24-25, 2016, at the University of Luxembourg, Luxembourg. This was a theory meeting between the team members to discuss research progress and plans for the project.

FAIRDOM team is inviting all PALs to participate in the second FAIRDOM PALs meeting. The event will take place on Dec. 9-10th , 2015 in Munich, immediately after the ERAsysAPP exchange meeting scheduled for Dec 8-9th. Beginning at 14:00 on Dec 9h, it will continue till 13:00 on Dec. 10th. Please, consider this when booking your plane/train tickets as well as hotel rooms.

The FAIRDOM team considers the meeting as an opportunity to update the PALs on available data/model management solutions, recent ...

This workshop is for computational biologists and experimentalists who wish to learn about standards, citeable data, about how to make scientific results sustainable, available through open repositories, and about how to find and reuse other people’s works. It comprises of a mixture of lectures and hands-on sessions. We will teach you the major standards and tools that support these standards, as well as steps towards encoding and publishing reproducible modeling results. Topics include data ...

The annual international conference on Intelligent Systems for Molecular Biology (ISMB) is the major meeting of the International Society for Computational Biology (ISCB). Over the past 22 years the ISMB conference has grown to become the world's largest bioinformatics/computational biology conference. Joining forces with the European Conference on Computational Biology (14th Annual Conference) ISMB/ECCB 2015 will be the year's most important computational biology event globally. The conferences ...

The BBSRC has recently funded the UK Multiscale Biology network, motivated by BBSRC strategic discussions which identified ‘Multi-Scale Biology’ (MSB) as a key area of research and capability that will be at the forefront of bioscience research over the next 5-10 years. The network will aim to: • facilitate the exploitation of areas of synergy between researchers across the UK in the broad area of multi-scale biology (MSB); • raise awareness of the benefits of MSB; • identify areas that are most ...

1st FAIRDOM + EraSysApp PALs meeting will be co-located with ERASysAPP – EXCHANGE: Networking and Info Day in Berlin, on 16 -17 April 2015

April 16th ABION Spreebogen Hotel, Salon Charlottenburg

18:00 -22:00 Social gathering and informal presentations with FAIRDOM team + old PALs +new PALs (with food and drinks served)

April 17th ABION Spreebogen Hotel, Salon Bellevue

9:00 -9:15 Short introduction from funders (Christian Rückert, PtJ)

9:15 -10.00 Warming up FAIRDOM, FAIRDOMHub and openSEEK ...

Semantic web applications and tools for life science.

Since 2008, the SWAT4LS Workshop has provided a platform for the presentation and discussion of the benefits and limits of applying web-based information systems and semantic technologies in the domains of health care and life sciences. SWAT4LS will provide the same open and stimulating environment that has previously brought together researchers, developers, and users, from various fields including eHealth, biomedical and clinical informatics, ...

The kickoff meeting of CropClock team took place in November 12, 2014 at the Max Plank Institute (MPIPZ, http://www.mpipz.mpg.de/en), Kologne, Germany. The goal for this meeting was for the members of the various teams to get acquainted with each other’s expertise and to discuss the following items: 1) Logistics about the project start, 2) Data that need to be shared, 3) Matlab code that needs to shared among the teams. The initial plan of action for data sharing was also laid out.

This mini-symposium, colocated at the ECMTB in Gothenburg, presents the state-of-the-art in computational methods for multicellular systems biology. It brings together developers and users of this software to identify common approaches and future challenges concerning multiscale integration, model specification, model exchange, scalability, workflow management as well as compliance to standards and guidelines. The session thus aims to provide an overview of the available modeling and simulation ...

Approximate dates of plant growth and harvesting by Imaizumi lab, University of Washington in Seattle

Systems Biology is one of the most prominent newly emerging interdisciplinary science areas. By connecting fields such as genomics, proteomics, cell biology, medicine, molecular biology, biochemistry and genetics, with mathematics, bioinformatics, engineering and computation, it enables discovery of yet unknown principles underlying the functioning of living cells. At the same time testable and predictive models of complex cellular pathways and eventually of whole cells are generated, which are ...

7th All hands PALs + SEEK users meeting will be co-located with Computational Modeling in Biology Network (COMBINE) meeting taking place from 16th to 20th of September 2013 in Paris. COMBINE is an initiative to coordinate the development of the various community standards and formats, details to meeting agenda and location here: http://mbine.org/events/COMBINE_2013

We plan to arrive on Wednesday, 18th, to participate in COMBINE on Thursday and Friday morning, and to have PALs- only sessions on ...

The next All Hands PALs meeting will take place on Thursday 29th and Friday 30th November 2012 in Heidelberg. The meeting will start on Thursday morning (arriving in Heidelberg on Wednesday evening), and finishing after lunch on Friday, so that you can get to home before weekend starts.

Meeting agenda

Thursday 29th November 9:15 Arriving at HITS 9:30 – 10:00 Introduction to PALs meeting 10:00 – 10:45 Review of new SEEK features. 10:45 – 11:00 Coffee break 11:00 – 12:00 An update on SEEK BioSamples ...

SysMO-LAB2 Meeting Copenhagen 2012

We've presented SEEK at the ICSB / PLATFORM Computational Tools and Algorithms on 20th of August 2012 in Toronto, Canada

The third annual COMBINE meeting took place at The Donnelly Centre building at the University of Toronto from Wednesday August 15 through Sunday Aug. 19, 2012

The 5th annual All Hands PALs meeting will take place on 21-22 of May 2012 in Rostock/Warnemünde. The main purpose of the meeting is to update the PALs on the latest developments in SysMO-SEEK and to identify new features and priorities arrising from work in the SysMO projects .

Meeting agenda:

Monday 21st of May

Morning - What's new in SEEK 9:15 – 9:45 Arrival, Introduction and welcome to new people (Wolfgang) 9:45 – 10:45 New features in SEEK & Roles (Stuart) 10:45 – 11:15 Coffee break 11:15 ...

Annual Conference of Bacillus subtilis community.

The next SySMO SEEK users meeting will be held in Berlin on March 26-27 2012. Since our last users workshop focused on modeling issues, this one will focus on experimental data and its linking to models. Meeting info is also available at our web page details here http://www.sysmo-db.org/node/53. Detailed agenda can be downloaded here https://seek.sysmo-db.org/data_files/937

Meeting will take place at the Beuth Hochschule für Technik Berlin http://www.beuth-hochschule.de/1654/, accomodation hotel ...

Progress Meeting

BaCell consotium in Groningen.

Agenda Saturday 27th August

9:15 Pick up from Hotelo hotel 9:30 – 10:00 Arrive at HITS, coffee 10:00 – 10:15 Introduction 10:15 – 11:45 Lightning Talks by PALS and SysMO-DB team *(for details see Introduction to Lightning Talks and ISBE session at PALs meeting on 27th of August in Heidelberg associated to this event http://seek.sysmo-db.org/data_files/902 ) 11:45 – 12:15 Coffee break 12: 15 – 13:00 Review of new SEEK features (presentation available as data file associated to this event here ...