BioDare_metadata Version 1
Original BioDare metadata, converted to json format
SEEK ID: https://fairdomhub.org/data_files/9793?version=1
Filename:
BioDare_metadata.json
Format: JSON document
Size: 73.3 KB
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"name": "cca1 lhy Long #1 CCR2 marker",
"purpose": "Test for period changes during seedlling growth in the TopCount, in WT and cca lhy double mutants",
"description": "If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes using luciferase. The lhy cca1 mutant was of particular interest, as it had a very short period to start with - was this perhaps rescued in older plants? In fact, ultradian rhythms were revealed.. Replicated in Long #2 experiment, Oct 2003.",
"comments": "Data collection by Victoria Hibberd ca. September 2003; files found by Andrew Millar in 2012, reanalysed on sabbatical in 2015.\nNote only 4 plants of line 213 in this replicate. Line 313 replaces it in #2 replicate.",
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"author": "Victoria Hibberd",
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"comment": "again, standard Warwick procedure as described in Hall et al. Plant Cell 2003. However, light levels in the black wells in the TopCount were very low. 2uE each of R+B is the maximum. R and B LEDs were in alternating rows of colour, next to the stackers. LEDs at each end of the plate (i.e. next to well columns 1 and 12) and would be low (1-2 micromol/m2/sec) and uneven (ca. half in rows 6,7) despite the mirror plates.",
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"parameters": "Each plate held 5 mins in dark before counting started. Counting with 2-detector TopCount took ca. 2.8 mins per plate. Each plate counted every 29.01 minutes (XL trendline is actually 29.8 mins, but no matter)."
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},
"pedro": {},
"biblio": {
"principal": "Andrew Millar",
"institution": "University of Edinburgh",
"author": [
"Victoria Hibberd",
"Anthony Hall"
],
"curator": "Andrew Millar"
}
}
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Views: 175 Downloads: 9
Created: 19th Jun 2026 at 15:47
Last updated: 19th Jun 2026 at 15:48
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Version 1 (earliest) Created 19th Jun 2026 at 15:47 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Advanced Projects list for this Data file with search and filtering
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Advanced Investigations list for this Data file with search and filtering
Collection of experiments created by Hibberd Victoria on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished
Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker
Advanced Studies list for this Data file with search and filtering
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Hibberd Victoria
Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker
Advanced Assays list for this Data file with search and filtering
cca1 lhy Long #1 CCR2 marker
| Property | Value |
|---|---|
| BioDare ID | 3648 |
| Author | Victoria Hibberd |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Hibberd Victoria
Study: Unpublished
