Sample_list
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List of samples used in the assay (extracted from original BioDare metadata and converted to csv)

SEEK ID: https://fairdomhub.org/data_files/9786?version=1

Filename: Sample_list.csv

Format: Comma-separated values document

Size: 13.2 KB

sample_id,sample_type,origin,growth_stage,age,marker,growth_cond_name,experiment_cond_name,ignored,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line,genetic_info.provenance,param.@name,param.@value
1,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
2,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
3,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
4,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
5,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
6,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
7,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
8,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
9,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
10,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
11,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
12,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
13,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
14,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
15,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
16,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
17,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
18,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
19,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
20,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
21,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
22,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
23,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
24,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,W1,Robust stock,TAG,Luc
25,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
26,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
27,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
28,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
29,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
30,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
31,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
32,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
33,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
34,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
35,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
36,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
37,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
38,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
39,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
40,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
41,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
42,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
43,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
44,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
45,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
46,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
47,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
48,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,211,Robust stock,TAG,Luc
49,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
50,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
51,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
52,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
53,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
54,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
55,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
56,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
57,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
58,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
59,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
60,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
61,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
62,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
63,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
64,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
65,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
66,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
67,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
68,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
69,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
70,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
71,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
72,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,316,Robust stock,TAG,Luc
73,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
74,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
75,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
76,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
77,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
78,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
79,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
80,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
81,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
82,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
83,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
84,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
85,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
86,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
87,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
88,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
89,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
90,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
91,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
92,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
93,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
94,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
95,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc
96,seedling,seedling,seedling,7,CCA1,12L:12D WL,constant R+B,false,Arabidopsis thaliana,Wasilewski (WS),cca1;lhy,346,Robust stock,TAG,Luc

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Creators and Submitter

Creators

Not specified

Additional credit

Victoria Hibberd

Submitter

Daniel Thedie

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Activity

Views: 98 Downloads: 9

Created: 19th Jun 2026 at 15:45

Last updated: 19th Jun 2026 at 15:45

Version History

Version 1 (earliest) Created 19th Jun 2026 at 15:45 by Daniel Thedie

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Daniel Thedie

Projects: Millar group, BioDare1

Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh

https://orcid.org/0000-0002-1352-7245

Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering

Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses

Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.

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Centre for Engineering Biology (prev. SynthSys)

The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.

Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1

Web page: https://biology.ed.ac.uk/centre-engineering-biology

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BioDare1

Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).

Programme: Centre for Engineering Biology (prev. SynthSys)

Public web page: Not specified

Organisms: Not specified

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Hibberd Victoria

BioDare1

Collection of experiments created by Hibberd Victoria on the original BioDare and automatically transferred to FAIRDOM Hub.

Submitter: Daniel Thedie

Studies: Unpublished

Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:44

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Unpublished

BioDare1

Unpublished

DOI: none

Submitter: Daniel Thedie

Investigation: Hibberd Victoria

Assays: cca1 lhy Long #1 CAB2 marker, cca1 lhy Long #1 CCA1 marker, cca1 lhy Long #1 CCR2 marker

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:44

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cca1 lhy Long #1 CCA1 marker

BioDare1

cca1 lhy Long #1 CCA1 marker

Property	Value
BioDare ID	3638
Author	Victoria Hibberd
Institution	University of Edinburgh
License	CC_BY

Description

If periods change during development, then our genetic screens for preiod-altering clock mutants might recover developmental mutants. Leaf movement assays suggestted that period might change. Ten-day data collections in the TopCount were intended to test for such period changes ...

Submitter: Daniel Thedie

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Hibberd Victoria

Study: Unpublished

Organisms: Arabidopsis thaliana

SOPs: No SOPs

Data files: BioDare_metadata, Plate1116 #1-CCA1 for BioDare.1, Readme, Sample_list

Snapshots: No snapshots

Created: 19th Jun 2026 at 15:44, Last updated: 19th Jun 2026 at 15:45