ExploreList of samples used in the assay (extracted from original BioDare metadata and converted to csv)
SEEK ID: https://fairdomhub.org/data_files/9750?version=1
Filename:
Sample_list.csv
Format: Comma-separated values document
Size: 3.81 KB
sample_id,sample_type,origin,growth_stage,age,marker,growth_cond_name,experiment_cond_name,ignored,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line 1,seedling,seedling,seedling,0,GI,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 2,seedling,seedling,seedling,0,GI,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 3,seedling,seedling,seedling,0,GI,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 4,seedling,seedling,seedling,0,GI,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 5,seedling,seedling,seedling,0,FKF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 6,seedling,seedling,seedling,0,FKF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 7,seedling,seedling,seedling,0,FKF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 8,seedling,seedling,seedling,0,FKF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 9,seedling,seedling,seedling,0,CDF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 10,seedling,seedling,seedling,0,CDF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 11,seedling,seedling,seedling,0,CDF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 12,seedling,seedling,seedling,0,CDF1,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 13,seedling,seedling,seedling,0,CO,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 14,seedling,seedling,seedling,0,CO,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 15,seedling,seedling,seedling,0,CO,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 16,seedling,seedling,seedling,0,CO,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 17,seedling,seedling,seedling,0,FT,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 18,seedling,seedling,seedling,0,FT,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 19,seedling,seedling,seedling,0,FT,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 20,seedling,seedling,seedling,0,FT,Ito2008_LD,Ito2008_LD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 21,seedling,seedling,seedling,0,CDF1,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 22,seedling,seedling,seedling,0,CDF1,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 23,seedling,seedling,seedling,0,CDF1,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 24,seedling,seedling,seedling,0,CDF1,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 25,seedling,seedling,seedling,0,CO,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 26,seedling,seedling,seedling,0,CO,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 27,seedling,seedling,seedling,0,CO,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 28,seedling,seedling,seedling,0,CO,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown 29,seedling,seedling,seedling,0,FT,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 30,seedling,seedling,seedling,0,FT,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1-2,unknown 31,seedling,seedling,seedling,0,FT,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),prr5-11,unknown 32,seedling,seedling,seedling,0,FT,Ito2008_SD,Ito2008_SD,false,Arabidopsis thaliana,Columbia (Col),toc1;prr5,unknown
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Created: 19th Jun 2026 at 15:10
Last updated: 19th Jun 2026 at 15:11
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Version 1 (earliest) Created 19th Jun 2026 at 15:10 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Collection of experiments created by Ito, S. on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished
Assays: Ito 2007 wt LD PRR9 protein, Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, pr...
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Ito, S.
Assays: Ito 2007 wt LD PRR9 protein, Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, pr...
Ito et al. (2008); GI, FKF1, CDF1, CO, FT; 16L:8D, 10L:14D; WT, toc1, prr5, toc1;prr5
| Property | Value |
|---|---|
| BioDare ID | 13790751359110 |
| Author | Ito, S. |
| Institution | Nagoya University |
| License | CC_BY |
Description
Purpose
In Arabidopsis thaliana, many circadian clock-associated genes have been identified. Among them, the eveningexpressed TOC1 (TIMING OF CAB EXPRESSION 1) gene plays a role by forming a transcriptional feedback core loop ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Ito, S.
Study: Unpublished
