BioDare_metadata Version 1
Original BioDare metadata, converted to json format
SEEK ID: https://fairdomhub.org/data_files/9700?version=1
Filename:
BioDare_metadata.json
Format: JSON document
Size: 72.6 KB
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},
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{
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},
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},
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},
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},
{
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},
{
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},
{
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},
{
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},
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},
{
"sample_id": "36",
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},
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},
{
"sample_id": "37",
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},
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},
{
"sample_id": "38",
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},
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},
{
"sample_id": "39",
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},
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},
{
"sample_id": "40",
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},
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},
{
"sample_id": "41",
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},
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},
{
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},
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},
{
"sample_id": "43",
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},
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},
{
"sample_id": "44",
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},
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},
{
"sample_id": "45",
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"genetic_info": {
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},
"marker": "CDF1",
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},
{
"sample_id": "46",
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},
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},
{
"sample_id": "47",
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},
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},
{
"sample_id": "48",
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"genetic_info": {
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},
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},
{
"sample_id": "49",
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"genetic_info": {
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},
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},
{
"sample_id": "50",
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},
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},
{
"sample_id": "51",
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"genetic_info": {
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"genotype": "COox",
"line": "unknown"
},
"marker": "CDF1",
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"experiment_cond_name": "experiment_song_SD",
"ignored": "false"
},
{
"sample_id": "52",
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"growth_stage": "seedling",
"age": "0",
"genetic_info": {
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"line": "unknown"
},
"marker": "CDF1",
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},
{
"sample_id": "53",
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"genetic_info": {
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},
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},
{
"sample_id": "54",
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},
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},
{
"sample_id": "55",
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},
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"ignored": "false"
},
{
"sample_id": "56",
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"growth_stage": "seedling",
"age": "0",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "COoxCDF1ox",
"line": "unknown"
},
"marker": "CDF1",
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"ignored": "false"
}
]
}
},
"pedro": {
"@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
"@xsi:schemaLocation": "/Z:/communal/DataDescription/models/literature/model/full_literature.xsd",
"name": "Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.",
"purpose": "To investigate the roles of CDF1 and FKF1 in the Arabidopsis flowering time system.",
"description": "CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they also play a role with FT mRNA, a direct target of CO, that is crucial in determining the photoperiodic-specific flowering of Arabidopsis.",
"pubmed_id": "000000000",
"provenance": {
"pub_title": "FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering",
"first_author": "Song, Y.H.",
"group": "Imaizumi",
"pub_date": "2012-05-25"
},
"growth_condition": [
{
"name": "growth_song_SD",
"medium": "Agar 3% sucrose",
"stratification": "3 days at 4C",
"duration": "9",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "180",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "8"
}
}
}
},
{
"name": "growth_song_LD",
"medium": "Agar 3% sucrose",
"stratification": "3 days at 4C",
"duration": "9",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "90",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "16"
}
}
}
}
],
"experimental_condition": [
{
"name": "experiment_song_SD",
"medium": "Agar 3% sucrose",
"duration": "1",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "180",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "8"
}
}
}
},
{
"name": "experiment_song_LD",
"medium": "Agar 3% sucrose",
"duration": "1",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "90",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "16"
}
}
}
}
],
"measurement": {
"technique": "RT-PCR",
"description": "Unknown currently."
},
"sample_preparation": {
"method": "Unknown currently."
},
"samples": {
"sample": [
{
"sample_id": "1",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type"
},
"marker": "CO",
"growth_cond_name": "growth_song_SD",
"experiment_cond_name": "experiment_song_SD"
},
{
"sample_id": "2",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
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"genotype": "Wild Type"
},
"marker": "CO",
"growth_cond_name": "growth_song_SD",
"experiment_cond_name": "experiment_song_SD"
},
{
"sample_id": "3",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
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},
"marker": "CO",
"growth_cond_name": "growth_song_SD",
"experiment_cond_name": "experiment_song_SD"
},
{
"sample_id": "4",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type"
},
"marker": "CO",
"growth_cond_name": "growth_song_LD",
"experiment_cond_name": "experiment_song_LD"
},
{
"sample_id": "5",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
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},
"marker": "CO",
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"experiment_cond_name": "experiment_song_LD"
},
{
"sample_id": "6",
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},
"marker": "CO",
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"experiment_cond_name": "experiment_song_LD"
},
{
"sample_id": "7",
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"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
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},
"marker": "CO",
"growth_cond_name": "growth_song_SD",
"experiment_cond_name": "experiment_song_SD"
},
{
"sample_id": "8",
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"origin": "seedling",
"growth_stage": "seedling",
"genetic_info": {
"species": "Arabidopsis thaliana",
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},
"marker": "CO",
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"experiment_cond_name": "experiment_song_LD"
},
{
"sample_id": "9",
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"growth_stage": "seedling",
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"species": "Arabidopsis thaliana",
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"genotype": "COox"
},
"marker": "CO",
"growth_cond_name": "growth_song_SD",
"experiment_cond_name": "experiment_song_SD"
},
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},
"biblio": {
"principal": "Imaizumi T",
"institution": "University of Washington",
"author": [
"Song YH",
"Smith RW",
"To BJ",
"Millar AJ"
]
}
}
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Created: 19th Jun 2026 at 14:26
Last updated: 19th Jun 2026 at 14:26
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Version 1 (earliest) Created 19th Jun 2026 at 14:26 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
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Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of experiments created by Song, Y.H. on the original BioDare and automatically transferred to FAIRDOM Hub.
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Unpublished
DOI: none
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Song et al. (2012); WT, fkf1, COox, COox;fkf1 and COoxCDF1ox in SD and LD at 22oC.
| Property | Value |
|---|---|
| BioDare ID | 13227587445347 |
| Author | Song, Y.H. |
| Institution | University of Washington |
| License | CC_BY |
Description
Literature data from: 'FKF1 conveys timing information for CONSTANS stabilization in photoperiodic flowering' by: Song, Y.H..
CDF1 and FKF1 have previously been shown to regulate CO mRNA. This data highlights that they ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Song, Y.H.
Study: Unpublished
