ExploreList of samples used in the assay (extracted from original BioDare metadata and converted to csv)
SEEK ID: https://fairdomhub.org/data_files/9153?version=1
Filename:
Sample_list.csv
Format: Comma-separated values document
Size: 1.76 KB
sample_id,sample_type,origin,growth_stage,age,marker,growth_cond_name,experiment_cond_name,ignored,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line 1,seedling,seedling,seedling,0,CCA1,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 2,seedling,seedling,seedling,0,CCA1,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown 3,seedling,seedling,seedling,0,LHY,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 4,seedling,seedling,seedling,0,LHY,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown 5,seedling,seedling,seedling,0,PRR9,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 6,seedling,seedling,seedling,0,PRR9,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown 7,seedling,seedling,seedling,0,GI,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 8,seedling,seedling,seedling,0,GI,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown 9,seedling,seedling,seedling,0,ELF4,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 10,seedling,seedling,seedling,0,ELF4,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown 11,seedling,seedling,seedling,0,TOC1,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),Wild Type,unknown 12,seedling,seedling,seedling,0,TOC1,FR-D cycles,1 x FR-D - 3 x cFR - 2 x DD,false,Arabidopsis thaliana,Columbia (Col),phyA-211,unknown
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Created: 19th Jun 2026 at 09:59
Last updated: 19th Jun 2026 at 09:59
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Version 1 (earliest) Created 19th Jun 2026 at 09:59 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
Collection of experiments created by Wenden Benedicte on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished, Wenden et al. (2012)
Assays: BW-detached_LD-LL_#03, BW-detached_LD-LL_#06, BW-detached_LL-LL_#14, BW-detached_LL-LL_#16, BW-detached_LL-LL_#20, BW-intact_LD-LL_#23, BW-intact_LL-LD_#31, BW-intact_LL-LL_#37, BW-intact_LL-LL_#46, BW-intact_LL-LL_#56, BW-intact_LL-LL_#58, CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
Wenden_qPCR_clock_cFR, WT and phyA
| Property | Value |
|---|---|
| BioDare ID | 13395774721132 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Literature data from: 'Light inputs shape the Arabidopsis circadian system' by: Benedicte Wenden.
Experiments performed on phyA and Col-0, 22 March to 26 Aug 2009, and on elf4, 8 March through November 2010. Published in Wenden et al. Plant Journal 2011. Curated ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
