ExploreList of samples used in the assay (extracted from original BioDare metadata and converted to csv)
SEEK ID: https://fairdomhub.org/data_files/9132?version=1
Filename:
Sample_list.csv
Format: Comma-separated values document
Size: 16.3 KB
sample_id,sample_type,origin,growth_stage,age,marker,growth_cond_name,experiment_cond_name,parameter,ignored,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line,genetic_info.provenance 1,group of seedlings,group of seedlings,seedling,7,ARR3,FR growth conditions,FR experimental conditions,1,false,Arabidopsis thaliana,Wasilewski (WS),Img Background,1,Robust Stock 2,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 3,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 4,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 5,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 6,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 7,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 8,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 9,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 10,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 11,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 12,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 13,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 14,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 15,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 16,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 17,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,50,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 18,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,8,Robust Stock 19,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,1,false,Arabidopsis thaliana,Wasilewski (WS),elf4,8,Robust Stock 20,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,19,Robust Stock 21,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,19,Robust Stock 22,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,19,Robust Stock 23,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,19,Robust Stock 24,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,10,false,Arabidopsis thaliana,Wasilewski (WS),elf4,19,Robust Stock 25,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,58,Robust Stock 26,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,58,Robust Stock 27,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,3,false,Arabidopsis thaliana,Wasilewski (WS),elf4,58,Robust Stock 28,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 29,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 30,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 31,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 32,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 33,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 34,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,14,false,Arabidopsis thaliana,Wasilewski (WS),elf3,25,Robust Stock 35,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),phyA,1,Robust Stock 36,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,1,false,Arabidopsis thaliana,Wasilewski (WS),phyA,1,Robust Stock 37,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),phyA,2,Robust Stock 38,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,1,false,Arabidopsis thaliana,Wasilewski (WS),phyA,2,Robust Stock 39,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 40,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 41,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 42,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 43,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 44,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 45,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 46,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 47,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 48,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 49,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 50,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 51,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 52,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 53,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 54,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 55,seedling,seedling,seedling,5,CCR2,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 56,group of seedlings,group of seedlings,seedling,5,CCR2,FR growth conditions,FR experimental conditions,50,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 57,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 58,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 59,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 60,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 61,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 62,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 63,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 64,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 65,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 66,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 67,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 68,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,50,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 69,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),elf4,1/81,Robust Stock 70,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,6,false,Arabidopsis thaliana,Wasilewski (WS),elf4,1/81,Robust Stock 71,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 72,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 73,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 74,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 75,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 76,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 77,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 78,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 79,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 80,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,40,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/1,Robust Stock 81,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 82,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 83,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 84,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 85,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 86,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 87,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 88,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 89,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 90,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 91,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 92,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,40,false,Arabidopsis thaliana,Wasilewski (WS),gi11,1/2,Robust Stock 93,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),phyA,1,Robust Stock 94,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,2,false,Arabidopsis thaliana,Wasilewski (WS),phyA,1,Robust Stock 95,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 96,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 97,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 98,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 99,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 100,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 101,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 102,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 103,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 104,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 105,seedling,seedling,seedling,5,CCA1,FR growth conditions,FR experimental conditions,,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock 106,group of seedlings,group of seedlings,seedling,5,CCA1,FR growth conditions,FR experimental conditions,50,false,Arabidopsis thaliana,Wasilewski (WS),Wild Type,1,Robust Stock
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Created: 19th Jun 2026 at 09:52
Last updated: 19th Jun 2026 at 09:52
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Version History
Version 1 (earliest) Created 19th Jun 2026 at 09:52 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
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Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of experiments created by Wenden Benedicte on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Unpublished, Wenden et al. (2012)
Assays: BW-detached_LD-LL_#03, BW-detached_LD-LL_#06, BW-detached_LL-LL_#14, BW-detached_LL-LL_#16, BW-detached_LL-LL_#20, BW-intact_LD-LL_#23, BW-intact_LL-LD_#31, BW-intact_LL-LL_#37, BW-intact_LL-LL_#46, BW-intact_LL-LL_#56, BW-intact_LL-LL_#58, CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
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Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Wenden Benedicte
Assays: CCA1 and CCR2 markers in elf4 mutant under Far Red light, Clock genes under Far Red light - 3, Clock genes under Far Red light - 5, Clock genes under Far Red light - 6, Wenden_qPCR_clock_cFR, WT and elf4, Wenden_qPCR_clock_cFR, WT and phyA
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Clock genes under Far Red light - 5
| Property | Value |
|---|---|
| BioDare ID | 12725464084711 |
| Author | Benedicte Wenden |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
Seedlings receive 3hrs of white light to germinate, then are entrained under 12/12 FR/D cycles for 3 days, sprayed, and imaged 24hrs after under 1 FR/D cycle, 3 days of continuous FR and 48h of DD
Purpose
Analysis of the main clock markers in elf4, elf3, gi ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Wenden Benedicte
Study: Unpublished
