BioDare_metadata
Version 1

Original BioDare metadata, converted to json format

SEEK ID: https://fairdomhub.org/data_files/8743?version=1

Filename: BioDare_metadata.json  Download

Format: JSON document

Size: 1.56 MB

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    "data_version": "0",
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        "date": "2014-10-17T14:37:41",
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        "date": "2014-10-17T14:33:38",
        "version": "3.0"
      },
      {
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        "date": "2014-09-15T16:54:07"
      },
      {
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        "date": "2014-09-08T18:30:41"
      },
      {
        "by": "Andrew Millar",
        "date": "2012-06-12T12:17:57"
      },
      {
        "by": "Andrew Millar",
        "date": "2012-06-12T12:13:18"
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        }
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    "licence": "CC_BY",
    "comment": "System generated on 17-Oct-2014"
  },
  "desc": {
    "experiment_type": "Luciferase exp",
    "id": "13394383188744",
    "status": "in progress",
    "name": "BW-detached_LL-LL_#16",
    "purpose": "Testing spatiotemporal pattern of rhythmic gene expression to assay intercellular coupling, and comparing the strength of intercellular coupling in LL with entrainment in LD.",
    "description": "Detached leaves of CCA1:LUC grown and imaged under constant light.\nSample number 16 of Table S1 in the 2012 PNAS paper \"Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf\". The paper is attached as a file to sample #03.",
    "comments": "Start date is the date when imaging started.\n\nNumerical data are provided as a 2D x time matrix in Matlab format (.mat), and as a text file with coordinates above each column of data. Please see the attached ReadMe file for notes on the data.",
    "provenance": {
      "site": "Edinburgh",
      "author": "Benedicte Wenden",
      "start_date": "2010-11-16"
    },
    "growth_condition": {
      "name": "LL growth",
      "medium": "Agar 1.25% MS 0.5",
      "incubation": "3 days at 4C",
      "growth_space": "Sanyo",
      "duration": "21.0",
      "temperature_conditions": {
        "label": "const. 22.0C",
        "env_conditions": {
          "type": "constant_temp",
          "label": "const. 22.0C",
          "duration": "21",
          "env_day": {
            "type": "constant_temp",
            "label": "constant temperature",
            "duration": "21",
            "cycle_length": "24",
            "base_value": "22.0",
            "second_value": "22.0"
          }
        }
      },
      "light_conditions": {
        "label": "W: LL",
        "light_channel": {
          "spectrum": "white",
          "intensity": "80",
          "source": "tube",
          "env_conditions": {
            "type": "constant_light",
            "label": "LL",
            "duration": "21",
            "env_day": {
              "type": "constant_light",
              "label": "constant light",
              "duration": "21",
              "cycle_length": "24",
              "base_value": "0.0",
              "second_value": "100.0",
              "env_period": {
                "start_time": "0:00",
                "duration": "24:00"
              }
            }
          }
        }
      }
    },
    "experimental_condition": {
      "name": "LL",
      "medium": "Agar 1.2% MS 0.5",
      "growth_space": "Percival + LED",
      "duration": "7.0",
      "exp_time_zero": "24",
      "temperature_conditions": {
        "label": "const. 22.0C",
        "env_conditions": {
          "type": "constant_temp",
          "label": "const. 22.0C",
          "duration": "7",
          "env_day": {
            "type": "constant_temp",
            "label": "constant temperature",
            "duration": "7",
            "cycle_length": "24",
            "base_value": "22.0",
            "second_value": "22.0"
          }
        }
      },
      "light_conditions": {
        "label": "B+R: LL",
        "light_channel": [
          {
            "spectrum": "red",
            "intensity": "20",
            "source": "LED",
            "env_conditions": {
              "type": "constant_light",
              "label": "LL",
              "duration": "7",
              "env_day": {
                "type": "constant_light",
                "label": "constant light",
                "duration": "7",
                "cycle_length": "24",
                "base_value": "0.0",
                "second_value": "100.0",
                "env_period": {
                  "start_time": "0:00",
                  "duration": "24:00"
                }
              }
            }
          },
          {
            "spectrum": "blue",
            "intensity": "20",
            "source": "LED",
            "env_conditions": {
              "type": "constant_light",
              "label": "LL",
              "duration": "7",
              "env_day": {
                "type": "constant_light",
                "label": "constant light",
                "duration": "7",
                "cycle_length": "24",
                "base_value": "0.0",
                "second_value": "100.0",
                "env_period": {
                  "start_time": "0:00",
                  "duration": "24:00"
                }
              }
            }
          }
        ]
      }
    },
    "measurement": {
      "technique": "Luciferase luminescence",
      "equipment": "HAM 2",
      "parameters": "15-minute exposures every 40 minutes. LEDs were switched off 5 mins before each image.",
      "description": "As outlined in the PNAS paper."
    },
    "sample_preparation": {
      "method": "Twenty-one-day–old detached leaves were also placed between a slide and a coverslip lying on two layers of porous fiber tape and provided with water and nutriments through a thin piece of precision wipe tissue in contact with both the petiole and the liquid MS medium (Fig. 1A of PNAS paper).\n\nPlants were sprayed with luciferin 48h before data collection started. Luciferin was also supplied in the liquid medium to which the leaf was transferred 24h before data collection started."
    },
    "samples": {
      "sample": [
        {
          "sample_id": "1",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "2",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "3",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "4",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "5",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
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          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "6",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "7",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "8",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "9",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "10",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "11",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "12",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "13",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "14",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "15",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "16",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "17",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "18",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "19",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "20",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
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          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
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          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1500",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1501",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1502",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1503",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1504",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        },
        {
          "sample_id": "1505",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL",
          "ignored": "false"
        }
      ]
    }
  },
  "pedro": {
    "@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
    "@xsi:schemaLocation": "/O:/communal/DataDescription/models/luc/model/newluc_model.xsd",
    "id": "will be updated by the system",
    "status": "in progress",
    "name": "BW-detached_LL-LL_#16",
    "purpose": "Testing spatiotemporal pattern of rhythmic gene expression to assay intercellular coupling, and comparing the strength of intercellular coupling in LL with entrainment in LD.",
    "description": "Detached leaves of CCA1:LUC grown and imaged under constant light.\nSample number 16 of Table S1 in the 2012 PNAS paper \"Spontaneous spatiotemporal waves of gene expression from biological clocks in the leaf\". The paper is attached as a file to sample #03.",
    "comments": "Start date is the date when imaging started.\n\nNumerical data are provided as a 2D x time matrix in Matlab format (.mat), and as a text file with coordinates above each column of data. Please see the attached ReadMe file for notes on the data.",
    "provenance": {
      "site": "Edinburgh",
      "author": "Benedicte Wenden",
      "start_date": "2010-11-16"
    },
    "growth_condition": {
      "name": "LL growth",
      "medium": "Agar 1.25% MS 0.5",
      "incubation": "3 days at 4C",
      "growth_space": "Sanyo",
      "duration": "21",
      "temperature_conditions": {
        "constant_temp": {
          "cycle_length": "24",
          "base_temp": "22"
        }
      },
      "light_conditions": {
        "light_channel": {
          "spectrum": "white",
          "intensity": "80",
          "source": "tube",
          "constant_light": {
            "cycle_length": "24"
          }
        }
      }
    },
    "experimental_condition": {
      "name": "LL",
      "medium": "Agar 1.2% MS 0.5",
      "growth_space": "Percival + LED",
      "duration": "7",
      "exp_time_zero": "24",
      "temperature_conditions": {
        "constant_temp": {
          "cycle_length": "24",
          "base_temp": "22"
        }
      },
      "light_conditions": {
        "light_channel": [
          {
            "spectrum": "red",
            "intensity": "20",
            "source": "LED",
            "constant_light": {
              "cycle_length": "24"
            }
          },
          {
            "spectrum": "blue",
            "intensity": "20",
            "source": "LED",
            "constant_light": {
              "cycle_length": "24"
            }
          }
        ]
      }
    },
    "measurement": {
      "technique": "Luciferase luminescence",
      "equipment": "HAM 2",
      "parameters": "15-minute exposures every 40 minutes. LEDs were switched off 5 mins before each image.",
      "description": "As outlined in the PNAS paper."
    },
    "sample_preparation": {
      "method": "Twenty-one-day–old detached leaves were also placed between a slide and a coverslip lying on two layers of porous fiber tape and provided with water and nutriments through a thin piece of precision wipe tissue in contact with both the petiole and the liquid MS medium (Fig. 1A of PNAS paper).\n\nPlants were sprayed with luciferin 48h before data collection started. Luciferin was also supplied in the liquid medium to which the leaf was transferred 24h before data collection started."
    },
    "samples": {
      "sample": [
        {
          "sample_id": "1",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "2",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "3",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "4",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "5",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "6",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "7",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "8",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "9",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "10",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "11",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "12",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "13",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "14",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "15",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "16",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "17",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "18",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "19",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "20",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "21",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "22",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "23",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "24",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "25",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "26",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "27",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "28",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "29",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "30",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "31",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "32",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "33",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "34",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "35",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
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          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "1504",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        },
        {
          "sample_id": "1505",
          "sample_type": "tissue",
          "origin": "leaf",
          "growth_stage": "seedling",
          "age": "21",
          "genetic_info": {
            "species": "Arabidopsis thaliana",
            "background": "Wasilewski (WS)",
            "genotype": "Wild Type",
            "line": "W1",
            "provenance": "Robust stock"
          },
          "marker": "CCA1",
          "growth_cond_name": "LL growth",
          "experiment_cond_name": "LL"
        }
      ]
    }
  },
  "biblio": {
    "principal": "Andrew Millar",
    "institution": "University of Edinburgh",
    "author": "Benedicte Wenden"
  }
}
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Benedicte Wenden

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Views: 44   Downloads: 2

Created: 18th Jun 2026 at 13:18

Last updated: 18th Jun 2026 at 13:18

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Version 1 (earliest) Created 18th Jun 2026 at 13:18 by Daniel Thedie

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