ExploreList of samples used in the assay (extracted from original BioDare metadata and converted to csv)
SEEK ID: https://fairdomhub.org/data_files/8475?version=1
Filename:
Sample_list.csv
Format: Comma-separated values document
Size: 29.2 KB
sample_id,sample_type,origin,growth_stage,age,marker,data_cathegory,growth_cond_name,experiment_cond_name,ignored,unit,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line,param.@name,param.@value 1,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 2,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 3,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 4,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 5,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 6,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 7,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 8,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 9,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 10,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 11,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 12,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 13,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 14,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 15,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 16,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 17,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 18,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 19,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 20,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 21,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 22,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 23,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 24,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 25,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 26,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 27,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 28,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 29,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 30,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 31,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 32,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 33,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 34,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 35,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 36,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 37,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 38,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 39,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 40,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 41,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 42,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 43,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 44,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 45,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 46,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 47,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 48,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 49,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 50,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 51,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 52,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 53,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 54,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 55,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 56,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 57,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 58,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 59,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 60,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 61,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 62,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 63,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 64,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 65,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 66,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 67,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 68,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 69,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 70,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 71,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 72,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 73,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 74,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 75,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 76,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 77,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 78,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 79,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 80,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 81,whole plant,whole plant,mid rosette,20,LUX,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 82,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 83,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 84,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to LL,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 85,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 86,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 87,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 88,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 89,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 90,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 91,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 92,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 93,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 94,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 95,whole plant,whole plant,mid rosette,20,LU,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 96,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 97,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 98,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),Wild Type,empty,unit,copy nr. per cell 99,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 100,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),gi-201,empty,unit,copy nr. per cell 101,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to 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cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 119,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 120,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 121,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 122,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 123,whole plant,whole plant,mid rosette,20,LU,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 124,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 125,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 126,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),toc1-101,empty,unit,copy nr. per cell 127,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 128,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 129,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 130,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 131,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 132,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 133,whole plant,whole plant,mid rosette,20,PRR9,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 134,whole plant,whole plant,mid rosette,20,PRR7,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 135,whole plant,whole plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 136,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 137,whole plant,whole plant,mid rosette,20,LU,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 138,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 139,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 140,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),Wild Type,empty,unit,copy nr. per cell 141,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 142,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 143,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 144,whole plant,whole plant,mid rosette,20,GAPDH5',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 145,whole plant,whole plant,mid rosette,20,LHY,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 146,whole plant,whole plant,mid rosette,20,CCA1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis 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rosette,20,GI,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 153,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 154,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Columbia (Col-0),prr7-3 prr9-1,empty,unit,copy nr. per cell 155,whole plant,whole plant,mid rosette,20,ACT2 155,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 156,whole plant,whole plant,mid rosette,20,ACT2 633,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 157,whole plant,whole plant,mid rosette,20,GAPDH3',qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis 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plant,mid rosette,20,PRR5,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 164,whole plant,whole plant,mid rosette,20,TOC1,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 165,whole plant,whole plant,mid rosette,20,LU,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 166,whole plant,whole plant,mid rosette,20,GI,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 167,whole plant,whole plant,mid rosette,20,ELF3,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell 168,whole plant,whole plant,mid rosette,20,ELF4,qRT-PCR,LD 20/18C,LD to DD,false,copy nr. per cell,Arabidopsis thaliana,Wasilewski (WS),lhy-21 cca1-11,empty,unit,copy nr. per cell
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Created: 18th Jun 2026 at 11:06
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Version 1 (earliest) Created 18th Jun 2026 at 11:06 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
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Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of experiments created by Flis Anna on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Flis et al. (2015), Flis et al. (2016), Unpublished
Assays: Clock gene RNAs under RD-RR in clock mutants, expt 1, Clock gene RNAs under RD-RR in clock mutants, expt 2, Clock gene RNAs under RD-RR in clock mutants, expt 3, Clock gene RNAs under RD-RR in clock mutants, expt 4, Flis et al. TiMet clock gene comparison across photoperiods, McWatters A.t. Col-0 WT clock RNA timeseries, Q-PCR LD (12:12) 17C CAB2, Q-PCR LD (12:12) 17C CCA1, Q-PCR LD (12:12) 17C ELF3, Q-PCR LD (12:12) 17C ELF4, Q-PCR LD (12:12) 17C GI, Q-PCR LD (12:12) 17C LHY, Q-PCR LD (12:12) 17C LUX, Q-PCR LD (12:12) 17C PRR5, Q-PCR LD (12:12) 17C PRR7, Q-PCR LD (12:12) 17C PRR9, Q-PCR LD (12:12) 17C TOC1, TiMet WP1.1 WS seedling vs rosette, TiMet WP1.1 qRT-PCR LD to LL and LD, TiMet WP1.1 qRT-PCR elf3 LD
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Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure
Flis et al. (2015)
DOI: 10.1098/rsob.150042
Submitter: Daniel Thedie
Investigation: Flis Anna
Assays: Clock gene RNAs under RD-RR in clock mutants, expt 1, Clock gene RNAs under RD-RR in clock mutants, expt 2, Clock gene RNAs under RD-RR in clock mutants, expt 3, Clock gene RNAs under RD-RR in clock mutants, expt 4, McWatters A.t. Col-0 WT clock RNA timeseries, Q-PCR LD (12:12) 17C CAB2, Q-PCR LD (12:12) 17C CCA1, Q-PCR LD (12:12) 17C ELF3, Q-PCR LD (12:12) 17C ELF4, Q-PCR LD (12:12) 17C GI, Q-PCR LD (12:12) 17C LHY, Q-PCR LD (12:12) 17C LUX, Q-PCR LD (12:12) 17C PRR5, Q-PCR LD (12:12) 17C PRR7, Q-PCR LD (12:12) 17C PRR9, Q-PCR LD (12:12) 17C TOC1, TiMet WP1.1 WS seedling vs rosette, TiMet WP1.1 qRT-PCR LD to LL and LD, TiMet WP1.1 qRT-PCR elf3 LD
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TiMet WP1.1 qRT-PCR LD to LL and LD
| Property | Value |
|---|---|
| BioDare ID | 2841 |
| Author | Anna Flis |
| Institution | MPI of Molecular Plant Physiology, Golm, Germany |
| License | CC_BY |
Description
2 WT (Col, Ws) and 5 clock mutants, in biological duplicates, from three conditions: Diurnal cycle (12L/12D), Extended night (DD), Extended light (LL), harvest every 2 hours. Numbers are in transcript copy per cell, obtained ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Flis Anna
Study: Flis et al. (2015)
