output/mast.txt Version 1
_p_SUSPHIRE/_I_T31_mealybug/_S_P4_cand_genomic/_A_MAST-bioinfo/
SEEK ID: https://fairdomhub.org/data_files/5874?version=1
Filename:
output/mast.txt
Format: Plain text document
Size: 23.7 KB
********************************************************************************
MAST - Motif Alignment and Search Tool
********************************************************************************
MAST version 5.0.1 (Release date: Thu Jun 21 11:55:30 2018 -0700)
For further information on how to interpret these results or to get
a copy of the MAST software please access http://meme-suite.org .
********************************************************************************
********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:
Timothy L. Bailey and Michael Gribskov,
"Combining evidence using p-values: application to sequence homology
searches", Bioinformatics, 14(48-54), 1998.
********************************************************************************
********************************************************************************
DATABASE AND MOTIFS
********************************************************************************
DATABASE Planococcus_citri_Pcitri.v1.proteins.fa (peptide)
Last updated on Fri Jun 29 14:15:43 2018
Database contains 42260 sequences, 15371022 residues
MOTIFS meme.txt (peptide)
MOTIF ID ALT ID WIDTH BEST POSSIBLE MATCH
----- -------------------------------------------------- ------ ----- -------------------
1 ASILGWCIEMLQAYFLILDDIMDNSETRRGQPCWYRLPDVG MEME-1 41 ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
2 DDPEQHRQAKTILLEMGQFFQIQDDFLDCFGD MEME-2 32 DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
3 GKIGTDIZDGKCSWLAVVALQRANPEQRKIMEENYGRPDPEKVAKIKELY MEME-3 50 GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
PAIRWISE MOTIF CORRELATIONS:
MOTIF 1 2
----- ----- -----
2 0.17
3 0.15 0.20
No overly similar pairs (correlation > 0.60) found.
Random model letter frequencies (from non-redundant database):
A 0.073 C 0.018 D 0.052 E 0.062 F 0.040 G 0.069 H 0.022 I 0.056 K 0.058
L 0.092 M 0.023 N 0.046 P 0.051 Q 0.041 R 0.052 S 0.074 T 0.059 V 0.064
W 0.013 Y 0.033
********************************************************************************
********************************************************************************
SECTION I: HIGH-SCORING SEQUENCES
********************************************************************************
- Each of the following 16 sequences has E-value less than 10.
- The E-value of a sequence is the expected number of sequences
in a random database of the same size that would match the motifs as
well as the sequence does and is equal to the combined p-value of the
sequence times the number of sequences in the database.
- The combined p-value of a sequence measures the strength of the
match of the sequence to all the motifs and is calculated by
o finding the score of the single best match of each motif
to the sequence (best matches may overlap),
o calculating the sequence p-value of each score,
o forming the product of the p-values,
o taking the p-value of the product.
- The sequence p-value of a score is defined as the
probability of a random sequence of the same length containing
some match with as good or better a score.
- The score for the match of a position in a sequence to a motif
is computed by by summing the appropriate entry from each column of
the position-dependent scoring matrix that represents the motif.
- Sequences shorter than one or more of the motifs are skipped.
- The table is sorted by increasing E-value.
********************************************************************************
SEQUENCE NAME DESCRIPTION E-VALUE LENGTH
------------- ----------- -------- ------
g32607.t1 planococcus_citri_pcitriv1... 5.3e-72 422
g14484.t1 planococcus_citri_pcitriv1... 1e-63 138
g21383.t1 planococcus_citri_pcitriv1... 8.1e-32 230
g7366.t1 planococcus_citri_pcitriv1... 2.8e-25 737
g34061.t1 planococcus_citri_pcitriv1... 1.5e-23 401
g9107.t1 planococcus_citri_pcitriv1... 4.1e-18 399
g2704.t1 planococcus_citri_pcitriv1... 4.2e-18 343
g26044.t1 planococcus_citri_pcitriv1... 3.4e-10 254
g21682.t1 planococcus_citri_pcitriv1... 8.3e-07 306
g1822.t1 planococcus_citri_pcitriv1... 3.7e-05 426
g14822.t1 planococcus_citri_pcitriv1... 0.00013 138
g35512.t1 planococcus_citri_pcitriv1... 0.43 271
g35890.t1 planococcus_citri_pcitriv1... 7.3 195
g18384.t1 planococcus_citri_pcitriv1... 7.3 119
g4554.t1 planococcus_citri_pcitriv1... 7.9 191
g24024.t1 planococcus_citri_pcitriv1... 7.9 561
********************************************************************************
********************************************************************************
SECTION II: MOTIF DIAGRAMS
********************************************************************************
- The ordering and spacing of all non-overlapping motif occurrences
are shown for each high-scoring sequence listed in Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001.
- The POSITION p-value of a match is the probability of
a single random subsequence of the length of the motif
scoring at least as well as the observed match.
- For each sequence, all motif occurrences are shown unless there
are overlaps. In that case, a motif occurrence is shown only if its
p-value is less than the product of the p-values of the other
(lower-numbered) motif occurrences that it overlaps.
- The table also shows the E-value of each sequence.
- Spacers and motif occurences are indicated by
o -d- `d' residues separate the end of the preceding motif
occurrence and the start of the following motif occurrence
o [n] occurrence of motif `n' with p-value less than 0.0001.
********************************************************************************
SEQUENCE NAME E-VALUE MOTIF DIAGRAM
------------- -------- -------------
g32607.t1 5.3e-72 150-[1]-96-[2]-5-[3]-48
g14484.t1 1e-63 4-[2]-4-[3]-48
g21383.t1 8.1e-32 128-[2]-3-[3]-17
g7366.t1 2.8e-25 137-[1]-109-[3]-131-[1]-93-[2]-3-[3]-50
g34061.t1 1.5e-23 129-[1]-93-[2]-3-[3]-53
g9107.t1 4.1e-18 130-[1]-93-[2]-3-[3]-50
g2704.t1 4.2e-18 76-[1]-127-[3]-49
g26044.t1 3.4e-10 118-[2]-4-[3]-50
g21682.t1 8.3e-07 50-[1]-78-[2]-42-[2]-31
g1822.t1 3.7e-05 172-[1]-81-[2]-100
g14822.t1 0.00013 33-[1]-64
g35512.t1 0.43 107-[2]-85-[1]-6
g35890.t1 7.3 152-[1]-2
g18384.t1 7.3 60-[2]-27
g4554.t1 7.9 1-[2]-35-[3]-73
g24024.t1 7.9 40-[2]-358-[3]-81
********************************************************************************
********************************************************************************
SECTION III: ANNOTATED SEQUENCES
********************************************************************************
- The positions and p-values of the non-overlapping motif occurrences
are shown above the actual sequence for each of the high-scoring
sequences from Section I.
- A motif occurrence is defined as a position in the sequence whose
match to the motif has POSITION p-value less than 0.0001 as
defined in Section II.
- For each sequence, the first line specifies the name of the sequence.
- The second (and possibly more) lines give a description of the
sequence.
- Following the description line(s) is a line giving the length,
combined p-value, and E-value of the sequence as defined in Section I.
- The next line reproduces the motif diagram from Section II.
- The entire sequence is printed on the following lines.
- Motif occurrences are indicated directly above their positions in the
sequence on lines showing
o the motif number of the occurrence,
o the position p-value of the occurrence,
o the best possible match to the motif, and
o columns whose match to the motif has a positive score (indicated
by a plus sign).
********************************************************************************
g32607.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 422 COMBINED P-VALUE = 1.25e-76 E-VALUE = 5.3e-72
DIAGRAM: 150-[1]-96-[2]-5-[3]-48
[1]
9.0e-32
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
+++++++++++++++++++++ ++++++++ ++++ +++
151 AHVLGWCVEMLQAFLLILDDIIDGAEMRRGYPCWYQLHENKNIAINDGVLVENGIYVILKKYFRDKPYYLDILEA
[2]
3.7e-33
DDPEMHRQAKTIL
++++ +++++ ++
226 CQDAIFKTSMGQLSEILMCRTFQETRKFDTFTIDRYNTITKYKTSYYSFHLPVALSMYMAGINDPEVHRQVKYIL
[3]
3.9e-25
LEMGHFFQIQDDFLDCFGD GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
+++++++++++++++++++ +++ ++++++ +++++++++ ++++ ++ ++ + ++++ + +++
301 LEMGHYYQIQDDYLDCFGDADEIGKLGFNDIKEGKCSWPIVVALQRATAQQKQTLEKCYQSADPENMQTVKKIHQ
g14484.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 138 COMBINED P-VALUE = 2.44e-68 E-VALUE = 1e-63
DIAGRAM: 4-[2]-4-[3]-48
[2] [3]
1.3e-34 3.5e-42
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECY
++++ +++++ +++++++++++++++++++++ ++++++++++++++++++++++++ ++++ ++ ++
1 MAGINDPEVHRQVKYILLEMGHYFQIQDDYLDCFGDADEIGKIGTDIQDGKCSWLIVVALQRATAQQKQTLEKCY
GRPDPEKVARIKELY
++ ++++++ +++ +
76 GSADPEKVETVKKIYQDIGIPSIFAAYEEDAYKLIVDQIQQLSRGVPQKIFFKILDKIYKRSN
g21383.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 230 COMBINED P-VALUE = 1.92e-36 E-VALUE = 8.1e-32
DIAGRAM: 128-[2]-3-[3]-17
[2]
1.3e-34
DDPEMHRQAKTILLEMGHFFQI
++++ +++++ +++++++++++
76 MGQSLDMLTCHTFQKTRKLDKFTMDRYKAIVKYKTAYYSFHLPVALSMYMAGINDPEVHRQVKYILLEMGHYFQI
[3]
9.8e-11
QDDFLDCFGD GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
++++++++++ + ++ ++++ ++ ++++ ++++++ +++ +
151 QDDYLDCFGDADEIGKIGTDISRCKSLANSGSFTKSNSQQKQTLEKCYGSADPQKVETVKKIYQDIGIPSIFAAY
g7366.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 737 COMBINED P-VALUE = 6.60e-30 E-VALUE = 2.8e-25
DIAGRAM: 137-[1]-109-[3]-131-[1]-93-[2]-3-[3]-50
[1]
7.2e-17
ACILGWCIEWLQA
+ +++ ++ +
76 NIVKKVLSDKNICFGSSIICDKNEEIIEHNVTGGKYSRMKLFLNACQNFTPKSKLTDEFILRSWILGYLPLMLTS
YFLVLDDIMDNSHTRRGQPCWYRHPDVG
+++++++ + +++++ + ++++ ++
151 SLLILDDIFDKSETRRMKPAWYKKVGVEEASLHALMMSTGVQMILKTFFINEPYFLSCLDIFTEAYWAVENVATL
[3]
2.1e-12
GKIGTDIQDGKCS
++ +
226 ECNRIDMLGKNKEYFTWETYDIIRVALNASNAFKLPILPAMNMAGIKYDHVAEDLEKLFAAFGKYSIIQNDYNDV
WLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
+++ ++ ++ ++++++++++ + ++ + + +
301 FDETSALEHCNYTQKEILHDCYGKNDRECIEAVVEIYQQLDLKWKYFKYLETMSRDISQFINEIDDVSFQKPLLD
[1]
4.2e-17
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
+ +++ ++ + +++++++ + +++++ + ++++ ++
451 ACQSFTPKSKLTDEFILRSWILGYLPLMLTSSLLILDDILDKSETRRMKPAWYKKVGVEEASRHALMMSTGVQII
[2] [3]
1.0e-05 1.6e-20
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRP
+ + + +++++ + + ++ ++ ++ + +++ ++ +++ +++++++++
601 GIKYDHIVEDLEKLFTAFGKYSIIQNDYNDVFDETSGKVLYEDIKNGKLSWFILTALEHCNYAQKEILHDCYGKK
DPEKVARIKELY
+++ ++ + + +
676 DPECIEAIVEIYHQLDLKGKYLEYIETMSRGILHFINQIDDVSFRKPLSDMFYIAENWYSHV
g34061.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 401 COMBINED P-VALUE = 3.67e-28 E-VALUE = 1.5e-23
DIAGRAM: 129-[1]-93-[2]-3-[3]-53
[1]
1.2e-15
ACILGWCIEWLQAYFLVLDDI
+ +++ ++ + +++++++
76 DKRICLGSSIVSDRNEEIIEYNLTGGKYKRMKLFLNVCQNFTPKSKLTDEFILRSWILGYLPLMLTSSLIIIDDI
MDNSHTRRGQPCWYRHPDVG
+ +++++ + + ++ ++
151 LDKSETRRMKPTWCRKTGVEEASGHALMMSSAMQIILRTFFLNEPYYMPCLEVFNESFWAGENVFALECKAVDVL
[2] [3
2.5e-05 9.
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD GK
+ + + +++++ + +
226 GKNKKYCTWETYDVLCAGLMASNAFKMPILAAMNMAGVKYDHVAEDLEKIFSAFGIISLVQNDYNDIFDKTSGKV
]
6e-20
IGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
++ ++ ++ + +++ ++ ++ +++++++++++ ++ + + +
301 LYEDIKYGKMSWFVLTALEHCNSDQKEILHDCYGKNDPDRIKAVVEVYQQLDLKGKYFKYMETMSRDISNFINKI
g9107.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 399 COMBINED P-VALUE = 9.59e-23 E-VALUE = 4.1e-18
DIAGRAM: 130-[1]-93-[2]-3-[3]-50
[1]
1.1e-12
ACILGWCIEWLQAYFLVLDD
+ +++ + + + ++++++
76 SDESICIGSSIVSERNQEIIEYNVNGGRLQRMKIFLNVCENLTPKHKLTDEYILRSWILGHLTQVLLSSLLMIDD
IMDNSHTRRGQPCWYRHPDVG
+ ++ +++ +++ +
151 ALDKSDLRRNKVTWYRTVGSMEFCSHSLMLNSGIQVILKNLFSKQSYYTQCIEIFNEILWIAESCFALEAKTIDV
[2] [
2.9e-05 3
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD G
+ + + +++ + ++
226 LGENKKYCSWKMFDTLSVGLMATTGFQLPVIAAMCMAGVKYDHLMEDLAKIFAPLGCLTTAENDYYDVFGKSTGK
3]
.8e-17
KIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
++ ++ ++ + ++ +++++ ++++++ ++ + + + +
301 VLYEDIKHGKLTWVLLTSLDNCNSDQKKILQECYGKDNPECIDAVVQVYRQLNLEERFLKYKTDISRHVTNLIKN
g2704.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 343 COMBINED P-VALUE = 9.87e-23 E-VALUE = 4.2e-18
DIAGRAM: 76-[1]-127-[3]-49
[1]
7.4e-12
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
+ +++ ++ + + ++++ + + ++++ + ++ + +
76 QAYVMACLNQLLLTSLMMIDDAIDDSKMRRNKPTWHNKVGRLICNDPFLLGTGVYTVMRNLFEKEPFYLPCLNVF
[3]
8.8e-19
GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
+++ ++ ++ + +++ + ++++++ ++++++ ++ + + + +
226 GFIVKDQNDYCDRYSKTQGKTPDEDIRLGKLTWFILTALEQSDAEQKKILQECYGKDNPECMNAVINVYDQLHLE
g26044.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 254 COMBINED P-VALUE = 8.15e-15 E-VALUE = 3.4e-10
DIAGRAM: 118-[2]-4-[3]-50
[2]
6.2e-05
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
+ + + +++ + ++
76 CIDVLGVNKKYCSWKMFDTLGVGLMATTGFQLPVIAAMSMAGVKYDHLKQDLAKIFAPLGCLTTAENDYYDVFGK
[3]
1.3e-17
GKIGTDIQDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
++ ++ ++ + ++ +++++ ++++++ ++ ++ + + +
151 GTGKVLLYEDIKHGKLTWILLTSLDNCNSDQKKILQECYGKNNPECINAVVKVYEQLNLEERFLKYKADVSRHVT
g21682.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 306 COMBINED P-VALUE = 1.97e-11 E-VALUE = 8.3e-07
DIAGRAM: 50-[1]-78-[2]-42-[2]-31
[1]
3.0e-13
ACILGWCIEWLQAYFLVLDDIMDNS
+ + +++ ++++++ +++
1 MESVFSNSGNREEDEKLLQPYFYILQVPGKLIRAKLARAFDYWLKIPADKLILVSEIVQMLHNASLLIDDIQDNS
HTRRGQPCWYRHPDVG
+++ + + ++
76 ILRRGIPVAHSIYGVASTINAANYVMFIALEKVISLNHHEAINVYTEQLLELHRGQGMEIYWRDNFTCPSEDEYK
[2]
2.2e-05
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
+ + + + ++ +++
151 TMTIRKTGGLFMLAIRLMQLFSDNKSNFKKLTELLGLYLQIRDDYCNLRSAEYTSNKSFCEDLTEGKFSFPIIHG
[2]
7.0e-05
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
++ + + + +++ + ++
226 IQSHPEDRQIFNILRQRTSDIEVKRYCVKLLEKFGSFQYTRNILLDIDKEVRAEVAKLGDNPLMISLIDELLSWD
g1822.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 426 COMBINED P-VALUE = 8.81e-10 E-VALUE = 3.7e-05
DIAGRAM: 172-[1]-81-[2]-100
[1]
1.6e-11
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
+ + +++++ ++++++ ++++ +++ + + +
151 MVAILMARAINYHLNKDSLSEAQRQVAMVSEMIHSASLIHDDVIDQSELRRGKPSVNVLFNHKKVAMAGDFVLAV
[2]
5.3e-0
DDPEMH
++
226 ASMMIARLKDNDVTLTLSQVITDLVQGEFMQLGAKETENERFAHYLTKTYRKTASLIANGLKAEAMLAGADPKLS
6
RQAKTILLEMGHFFQIQDDFLDCFGD
+ + ++ ++ ++
301 EVAFEYGRNVGIAFQLVDDLLDFVSSTDAMGKPTAADLKLGLATAPVLFACEKFPELNPMIMRRFQEPGDVEKAF
g14822.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 138 COMBINED P-VALUE = 3.00e-09 E-VALUE = 0.00013
DIAGRAM: 33-[1]-64
[1]
7.6e-13
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
++++++ ++ + ++ +++ +++ +++ + +
1 MDSGRFLRAAITLKVHEVMKLPHPEPEPKTMHTAHAMAWISELVQIPAIIEDDIADNSSLRRGKAPYHVGRSLVH
g35512.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 271 COMBINED P-VALUE = 1.03e-05 E-VALUE = 0.43
DIAGRAM: 107-[2]-85-[1]-6
[2]
1.1e-07
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
+ + ++++ ++ + +++ + +
76 YIRRTRPDGNCFYRAFAYAYFERLLNHQKEYESFKEIIVQSKLSLMSSGFSTVTLDDFHDTFMEVVNVLSKGASA
[
4
A
151 QEQLFKLFNEQGYSDYVVVYLRLITSFQLQRDADFYQNFIEGDRTIAEFCRQEVEPMYKESDHIHIIALSSALDV
1]
.0e-05
CILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
++ ++ ++ ++ +++ + + + ++
226 GIRVRYMDRGQSTEAIAHDFPEGSHARVHLLYRPGHYDILYPVESD
g35890.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 195 COMBINED P-VALUE = 1.72e-04 E-VALUE = 7.3
DIAGRAM: 152-[1]-2
[1]
6.7e-08
ACILGWCIEWLQAYFLVLDDIMDNSHTRRGQPCWYRHPDVG
+ + + ++++++ ++++ ++++
151 LLYSLLKWTLTVVISFLLIVFELQWWLFVKRNAPRWYRRQAALAA
g18384.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 119 COMBINED P-VALUE = 1.73e-04 E-VALUE = 7.3
DIAGRAM: 60-[2]-27
[2]
5.3e-06
DDPEMHRQAKTILLE
++ +
1 XNDVTLTLSQVITDLVQGEFMQLGAKETENERFAHYLTKTYRKTASLIANGLKAEAMLAGADPKLSEVAFEYGRN
MGHFFQIQDDFLDCFGD
+ ++ ++ ++
76 VGIAFQLVDDLLDFVSSTDRWVKPTAADLKLGLAPHPYYLHVKR
g4554.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 191 COMBINED P-VALUE = 1.88e-04 E-VALUE = 7.9
DIAGRAM: 1-[2]-35-[3]-73
[2] [3]
5.4e-06 3.5e-05
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD GKIGTDI
++++ ++ + + + ++ + +
1 MANHEDITTYCVLLMAIGCFERLNDFLSVCYPDVRERNEFKQRILRLHLLREDRVLKVDLFRNNKSLNEFINDAF
QDGKCSWLAVVALQRANPEQRKIMEECYGRPDPEKVARIKELY
++ +++++ + ++ ++ + + + +
76 QDAADLGVEFRNQFRSSPATERCLFECTGRGDFVIVMEFVDTFFPDEQVRMPMKIRLFEHFKEHLVAGSVSLRGS
g24024.t1
planococcus_citri_pcitriv1_core_32_85_1 protein
LENGTH = 561 COMBINED P-VALUE = 1.88e-04 E-VALUE = 7.9
DIAGRAM: 40-[2]-358-[3]-81
[2]
4.8e-05
DDPEMHRQAKTILLEMGHFFQIQDDFLDCFGD
+ + + + ++ + ++
1 MEAVPAKKRKTQSTSPQPANHNAPRFVNYNTTEERLKSFEKWPIPEIKTPIELAQVGFFYSGHEDLVQCFSCGGG
[3]
2.0e-07
GKIGTDIQDGKCSWLAVVAL
+ + +++ + + +
376 QICDDPWFLHAKLNPSCKFLLQMRGETFLKQVEQVLASRKKASKRTRSADESISCGSNDDNIQELMKSSVVQTVL
QRANPEQRKIMEECYGRPDPEKVARIKELY
+ + + + +++ + +++++
451 KVGFNESKIRVAIRYYLKCPEKAKTVKNLFAMIMIAQKKDPEVFACLQNLKKENDRCEKAKICKFCSEQGPISIL
********************************************************************************
CPU: node142
Time 4.712 secs.
mast -oc . -nostatus -minseqs 42260 -remcorr -ev 10.0 -dl http://www.uniprot.org/uniprot/?query=SEQUENCEID&sort=score meme.txt Planococcus_citri_Pcitri.v1.proteins.fa
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Creators and Submitter
Views: 538 Downloads: 35
Created: 16th May 2022 at 10:46
Last updated: 6th Nov 2024 at 15:26
AttributionsNone
Version History
Version 1 (earliest) Created 16th May 2022 at 10:46 by Marko Petek
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Related items
https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Studies: Investigation files, _S_P3_expressionEcoli, _S_P4_AdPathGenes, _S_P4_Pcitri_IsoSeq, _S_P4_Pcitri_genome, _S_P4_Pcitri_genome_extSamples, _S_P4_Pcitri_tr1, _S_P4_Pcitri_tr1tr2combo, _S_P4_Pcitri_tr2, _S_P4_cand_all, _S_P4_cand_genomic
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_01_NGI-IsoSeq, _A_01_RNAseq-CLC, _A_01_assembly2-rnaSPAdes, _A_01_mapToGenomeAll-STAR, _A_01_renameFASTA-Bioinfo, _A_02-CoEXpNetViz_gen-coexpr, _A_02_CDHIT-Bioinfo, _A_02_assembly2-IPS, _A_02_cDNAcupcake-dry, _A_02_limma-R, _A_02_mapToGenomeAll_limma-R, _A_03-IPS, _A_03_CDHIT2-Bioinfo, _A_03_limma_min50counts-R, _A_03_mapAs2ToGenome-STAR, _A_04_limma_min10counts-R, _A_04_mapIllumina-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _A_05_DE_limma-R, _A_05_assembly1-rnaSPAdes, _A_06_assembly1-IPS, _A_07_mapAs1ToGenome-STAR, _A_08_mapReadsToAs1-STAR, _A_09_As1_tr_limmaDE-R, _A_C98F-EcoliExpr, _A_IDIsearch-Bioinfo, _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_MSA-bioinfo, _A_MeUppS-EcoliExpr, _A_Node14610-EcoliExpr, _A_Node14610DmTP-EcoliExpr, _A_OtherMealybugCandidates-Alignment, _A_Pc1599-EcoliExpr, _A_Pc23180-EcoliExpr, _A_Pc2704-EcoliExpr, _A_Pc32607-EcoliExpr, _A_Pc7366II-EcoliExpr, _A_PcCis24-EcoliExpr, _A_Strep_CLDS-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_Trans1153-EcoliExpr, _A_Trans2-EcoliExpr, _A_Trans39-EcoliExpr, _A_Trans57-EcoliExpr, _A_Trans64-EcoliExpr, _A_Trans94-EcoliExpr, _A_candidatemining-bioinfo, _A_g14825_recon-bioinfo, _A_smallIDSsubunit-motifs, _I_T31_mealybug-files, _S_P3_expressionEcoli-files, _S_P4_AdPathGenes-files, _S_P4_Pcitri_IsoSeq-files, _S_P4_Pcitri_genome-files, _S_P4_Pcitri_genome_extSamples-files, _S_P4_Pcitri_tr1-files, _S_P4_Pcitri_tr1tr2combo-files, _S_P4_Pcitri_tr2-files, _S_P4_cand_all-files, _S_P4_cand_genomic-files
Short Name: P4_genomes Title: Mealybug genome queries for pheromone biosynthesis genes Description: Survey of the available mealybug genomes for potential sex pheromone biosynthesis genes Raw Data: Principal investigator: Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T31_mealybug
Assays: _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_g14825_recon-bioinfo, _S_P4_cand_genomic-files
Short Name: MAST-bioinfo Assay Class: DRY Assay Type: bioinfo Title: Search for MEME motif in proteome of P. citri Description: Using MEME software to look for motifs in proteins that resemble those found in plants producing similar compounds to mealybug sex pheromones pISA Assay creation date: 2018-11-23 pISA Assay creator: MPE Phenodata: None Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T31_mealybug
Study: _S_P4_cand_genomic
