output/byLines/MJU_20200212_GSEA_1_Data-qval-output.tsv Version 1
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_04_GSEA-Stat/
SEEK ID: https://fairdomhub.org/data_files/5292?version=1
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output/byLines/MJU_20200212_GSEA_1_Data-qval-output.tsv
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NAME SIZE high-low-up high-wt-up low-wt-up NAME SIZE high-low-down high-wt-down low-wt-down 1 PS 327 0.0 0.0 0.076130085 1.1 PS.LIGHTREACTION 221 0.0 0.0 0.09835544 1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II 92 0.0 0.0 0.32698074 1.1.1.1 PS.LIGHTREACTION.PHOTOSYSTEM II.LHC-II 38 0.0 0.0 0.2636716 1.1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM II.PSII POLYPEPTIDE SUBUNITS 53 0.0 0.0 0.07628681 1.1.2 PS.LIGHTREACTION.PHOTOSYSTEM I 49 0.0 0.0 0.11158455 1.1.2.1 PS.LIGHTREACTION.PHOTOSYSTEM I.LHC-I 20 0.0 0.0 0.034731545 1.1.2.2 PS.LIGHTREACTION.PHOTOSYSTEM I.PSI POLYPEPTIDE SUBUNITS 27 0.0 0.0 0.43188563 1.1.4 PS.LIGHTREACTION.ATP SYNTHASE 33 0.023821156 2.5436588E-4 0.43157664 1.1.6 PS.LIGHTREACTION.NADH DH 15 0.06531188 0.039107766 0.06888999 1.2 PS.PHOTORESPIRATION 40 0.019164875 3.359912E-4 0.43090528 1.3 PS.CALVIN CYCLE 64 0.0 0.0 0.298029 2 MAJOR CHO METABOLISM 135 0.790269 0.33888924 0.23752083 2.1 MAJOR CHO METABOLISM.SYNTHESIS 42 0.2921588 0.76906294 0.7552749 2.1.2 MAJOR CHO METABOLISM.SYNTHESIS.STARCH 33 0.62276137 1.0 0.64895004 2.2 MAJOR CHO METABOLISM.DEGRADATION 92 0.44141513 0.104238465 0.17801796 2.2.1 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE 47 0.069691494 0.038280528 0.8610339 2.2.1.3 MAJOR CHO METABOLISM.DEGRADATION.SUCROSE.INVERTASES 21 0.13674358 0.06681343 0.52296627 2.2.2 MAJOR CHO METABOLISM.DEGRADATION.STARCH 45 0.6652691 0.76280403 0.025008662 2.2.2.1 MAJOR CHO METABOLISM.DEGRADATION.STARCH.STARCH CLEAVAGE 21 0.78391147 0.2677475 0.005465854 3 MINOR CHO METABOLISM 106 0.51755995 0.18555059 0.039075173 3.2 MINOR CHO METABOLISM.TREHALOSE 24 0.78762037 0.24573344 0.032902814 3.5 MINOR CHO METABOLISM.OTHERS 40 0.4735149 0.97804403 0.2490776 4 GLYCOLYSIS 88 0.32297453 0.4367012 0.6626422 4.1 GLYCOLYSIS.CYTOSOLIC BRANCH 63 0.37053844 0.47233614 0.74068403 5 FERMENTATION 16 0.07884005 0.08059801 0.8510719 7 OPP 32 0.45325482 0.79133224 0.5651406 7.1 OPP.OXIDATIVE PP 19 0.4209309 0.6298729 0.6808613 8 TCA / ORGANIC TRANSFORMATION 102 0.57342577 0.98512816 0.057508778 8.1 TCA / ORGANIC TRANSFORMATION.TCA 66 0.43737024 0.88695025 0.8197063 8.1.1 TCA / ORGANIC TRANSFORMATION.TCA.PYRUVATE DH 23 0.98883295 1.0 0.89390963 8.2 TCA / ORGANIC TRANSFORMATION.OTHER ORGANIC ACID TRANSFORMATIONS 28 0.6394126 0.28416583 2.530303E-4 9 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS 127 0.1524293 0.6206442 0.036466043 9.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I) 43 0.018366423 0.8293647 0.033190645 9.1.1 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I).COMPLEX I 17 0.19087838 1.0 0.009228948 9.1.2 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.NADH-DH (TYPE I).LOCALISATION NOT CLEAR 26 0.028250206 0.5810636 0.29654688 9.9 MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS.F1-ATPASE 41 0.6572802 0.44275934 0.29846302 10 CELL WALL 341 0.7730493 0.4108731 0.42142704 10.1 CELL WALL.PRECURSOR SYNTHESIS 67 0.481327 0.91056246 0.19425495 10.2 CELL WALL.CELLULOSE SYNTHESIS 40 0.6749472 1.0 0.43751103 10.2.1 CELL WALL.CELLULOSE SYNTHESIS.CELLULOSE SYNTHASE 31 0.9186446 0.9899769 0.20728868 10.5 CELL WALL.CELL WALL PROTEINS 48 0.46775684 0.9194644 0.70881706 10.5.1 CELL WALL.CELL WALL PROTEINS.AGPS 19 0.019962203 0.010098433 0.2958957 10.5.1.1 CELL WALL.CELL WALL PROTEINS.AGPS.AGP 19 0.01650659 0.011842307 0.2990918 10.6 CELL WALL.DEGRADATION 110 0.061796322 0.040728014 0.5480588 10.6.1 CELL WALL.DEGRADATION.CELLULASES AND BETA-1,4-GLUCANASES 28 0.119832285 0.13400075 0.41777176 10.6.2 CELL WALL.DEGRADATION.MANNAN-XYLOSE-ARABINOSE-FUCOSE 36 0.6336782 0.28555548 0.009733883 10.6.3 CELL WALL.DEGRADATION.PECTATE LYASES AND POLYGALACTURONASES 37 0.06479189 0.42277312 0.8570258 10.7 CELL WALL.MODIFICATION 37 0.11364157 0.45123893 0.5601113 10.8 CELL WALL.PECTINESTERASES 23 0.7947742 1.0 0.72059214 11 LIPID METABOLISM 411 0.37096316 0.6130117 0.92598504 11.1 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION 121 0.1762649 0.12749031 0.54714 11.1.8 LIPID METABOLISM.FA SYNTHESIS AND FA ELONGATION.ACYL COA LIGASE 18 0.11526737 0.027511483 0.13201687 11.2 LIPID METABOLISM.FA DESATURATION 15 0.03918574 0.010013015 0.44790322 11.3 LIPID METABOLISM.PHOSPHOLIPID SYNTHESIS 36 0.27366966 0.10219818 0.19126272 11.6 LIPID METABOLISM.LIPID TRANSFER PROTEINS ETC 22 0.01930489 0.020412441 0.29133773 11.8 LIPID METABOLISM.EXOTICS (STEROIDS, SQUALENE ETC) 73 0.33993995 0.47063863 0.98941094 11.8.1 LIPID METABOLISM.EXOTICS (STEROIDS, SQUALENE ETC).SPHINGOLIPIDS 34 0.8288575 0.87581384 0.8881808 11.9 LIPID METABOLISM.LIPID DEGRADATION 114 0.023167312 0.015638635 0.5750684 11.9.2 LIPID METABOLISM.LIPID DEGRADATION.LIPASES 31 0.009875635 0.007641584 0.67292994 11.9.2.1 LIPID METABOLISM.LIPID DEGRADATION.LIPASES.TRIACYLGLYCEROL LIPASE 29 0.010488501 0.008721731 0.8589573 11.9.3 LIPID METABOLISM.LIPID DEGRADATION.LYSOPHOSPHOLIPASES 45 0.6012132 0.7919368 0.721769 11.9.4 LIPID METABOLISM.LIPID DEGRADATION.BETA-OXIDATION 30 0.11166402 0.01684036 0.09372785 12 N-METABOLISM 22 0.6206867 0.9667581 0.74292195 13 AMINO ACID METABOLISM 294 0.21934903 0.26571298 0.36622563 13.1 AMINO ACID METABOLISM.SYNTHESIS 223 0.55818045 0.6936245 0.7892588 13.1.1 AMINO ACID METABOLISM.SYNTHESIS.CENTRAL AMINO ACID METABOLISM 30 0.15516138 0.18037742 0.5317505 13.1.1.3 AMINO ACID METABOLISM.SYNTHESIS.CENTRAL AMINO ACID METABOLISM.ALANINE 16 0.8230482 0.91617256 0.5245047 13.1.3 AMINO ACID METABOLISM.SYNTHESIS.ASPARTATE FAMILY 49 0.71006286 0.28834814 0.32252693 13.1.3.4 AMINO ACID METABOLISM.SYNTHESIS.ASPARTATE FAMILY.METHIONINE 27 0.7864265 0.9990108 0.6704869 13.1.4 AMINO ACID METABOLISM.SYNTHESIS.BRANCHED CHAIN GROUP 21 0.40627372 0.17497493 0.39810538 13.1.5 AMINO ACID METABOLISM.SYNTHESIS.SERINE-GLYCINE-CYSTEINE GROUP 31 0.7419783 0.44648927 0.29415017 13.1.5.3 AMINO ACID METABOLISM.SYNTHESIS.SERINE-GLYCINE-CYSTEINE GROUP.CYSTEINE 23 0.71256274 1.0 0.23085847 13.1.6 AMINO ACID METABOLISM.SYNTHESIS.AROMATIC AA 64 0.15012795 0.19151297 0.6465768 13.1.6.1 AMINO ACID METABOLISM.SYNTHESIS.AROMATIC AA.CHORISMATE 17 0.3089696 0.6320196 0.5321304 13.1.6.5 AMINO ACID METABOLISM.SYNTHESIS.AROMATIC AA.TRYPTOPHAN 28 0.44023278 0.29466715 0.712674 13.2 AMINO ACID METABOLISM.DEGRADATION 57 0.011144033 0.006208702 0.0957696 13.2.3 AMINO ACID METABOLISM.DEGRADATION.ASPARTATE FAMILY 18 0.3353544 0.10599876 0.037559886 15 METAL HANDLING 69 0.52599365 0.5095057 0.85116005 15.2 METAL HANDLING.BINDING, CHELATION AND STORAGE 48 0.79288906 0.91097707 0.44238052 16 SECONDARY METABOLISM 272 0.0065947096 1.0721982E-4 0.12820297 16.1 SECONDARY METABOLISM.ISOPRENOIDS 97 0.131286 0.10570696 0.90154666 16.1.1 SECONDARY METABOLISM.ISOPRENOIDS.NON-MEVALONATE PATHWAY 31 0.27579162 0.26011452 0.9984062 16.1.2 SECONDARY METABOLISM.ISOPRENOIDS.MEVALONATE PATHWAY 19 0.3702598 0.6891654 0.05356364 16.1.4 SECONDARY METABOLISM.ISOPRENOIDS.CAROTENOIDS 24 0.03594651 0.07759891 0.54755175 16.1.5 SECONDARY METABOLISM.ISOPRENOIDS.TERPENOIDS 16 0.0 2.9422782E-4 0.7107832 16.2 SECONDARY METABOLISM.PHENYLPROPANOIDS 72 0.0 0.0 0.07453526 16.2.1 SECONDARY METABOLISM.PHENYLPROPANOIDS.LIGNIN BIOSYNTHESIS 44 0.0 0.0 0.023717409 16.5 SECONDARY METABOLISM.SULFUR-CONTAINING 24 0.015002461 0.0029080515 0.44766372 16.5.1 SECONDARY METABOLISM.SULFUR-CONTAINING.GLUCOSINOLATES 22 0.0108669745 0.0032684794 0.55616 16.5.1.1 SECONDARY METABOLISM.SULFUR-CONTAINING.GLUCOSINOLATES.SYNTHESIS 20 0.014126717 0.0057333694 0.42419526 16.5.1.1.1 SECONDARY METABOLISM.SULFUR-CONTAINING.GLUCOSINOLATES.SYNTHESIS.ALIPHATIC 20 0.017283725 0.007950532 0.4366753 16.8 SECONDARY METABOLISM.FLAVONOIDS 45 0.10562161 0.07819857 0.3185805 16.8.3 SECONDARY METABOLISM.FLAVONOIDS.DIHYDROFLAVONOLS 20 0.3932303 0.44439778 0.89644 17 HORMONE METABOLISM 361 0.06868056 0.0223946 0.07345289 17.1 HORMONE METABOLISM.ABSCISIC ACID 51 0.027644359 0.0015286502 0.005865276 17.1.1 HORMONE METABOLISM.ABSCISIC ACID.SYNTHESIS-DEGRADATION 16 0.7636644 0.33885399 0.07235732 17.1.2 HORMONE METABOLISM.ABSCISIC ACID.SIGNAL TRANSDUCTION 20 0.06613802 0.01443613 0.04124602 17.2 HORMONE METABOLISM.AUXIN 125 0.3710247 0.37109447 0.31663582 17.2.2 HORMONE METABOLISM.AUXIN.SIGNAL TRANSDUCTION 29 0.06361446 0.61862254 0.3468061 17.2.3 HORMONE METABOLISM.AUXIN.INDUCED-REGULATED-RESPONSIVE-ACTIVATED 85 0.36141387 0.37361446 0.70677716 17.3 HORMONE METABOLISM.BRASSINOSTEROID 42 0.16637272 1.0 0.033234604 17.3.1 HORMONE METABOLISM.BRASSINOSTEROID.SYNTHESIS-DEGRADATION 20 0.29438218 0.77908844 0.09659602 17.3.2 HORMONE METABOLISM.BRASSINOSTEROID.SIGNAL TRANSDUCTION 21 0.38727698 0.6908085 0.058684375 17.4 HORMONE METABOLISM.CYTOKININ 18 0.73764247 1.0 0.3404666 17.5 HORMONE METABOLISM.ETHYLENE 68 0.54452795 0.44274983 0.9305188 17.5.1 HORMONE METABOLISM.ETHYLENE.SYNTHESIS-DEGRADATION 38 0.47140393 0.24642932 1.0 17.5.2 HORMONE METABOLISM.ETHYLENE.SIGNAL TRANSDUCTION 24 0.18423973 0.10000925 0.58755016 17.6 HORMONE METABOLISM.GIBBERELIN 20 0.0094964355 0.0077047287 0.2180508 17.7 HORMONE METABOLISM.JASMONATE 33 0.0 0.0 0.0728531 17.7.1 HORMONE METABOLISM.JASMONATE.SYNTHESIS-DEGRADATION 24 0.008387654 0.008232542 0.5540746 18 CO-FACTOR AND VITAMINE METABOLISM 80 0.9181424 0.6633105 0.5452849 19 TETRAPYRROLE SYNTHESIS 70 0.0 0.0 0.9256017 20.1.2 STRESS.BIOTIC.RECEPTORS 424 0.5523632 0.2884292 0.18262434 20.1.2.1 STRESS.BIOTIC.RECEPTORS.CC-NBS-LRR 337 0.83210254 0.6897891 0.13718814 20.1.2.2 STRESS.BIOTIC.RECEPTORS.TIR-NBS-LRR 25 0.4416433 0.10258635 0.09089801 20.1.3 STRESS.BIOTIC.SIGNALLING 25 0.44444734 1.0 0.058977973 20.1.7 STRESS.BIOTIC.PR-PROTEINS 60 0.0 0.0 0.10711737 20.1.7.3 STRESS.BIOTIC.PR-PROTEINS.PR3/4/8/11 (CHITINASES AND CHITIN BINDING PROTEINS) 16 0.010603486 1.2253695E-4 0.043014646 20.2 STRESS.ABIOTIC 284 0.10587764 0.105637394 0.67169523 20.2.1 STRESS.ABIOTIC.HEAT 218 0.113232315 0.18024123 0.7996157 20.2.3 STRESS.ABIOTIC.DROUGHT/SALT 36 0.058060303 0.04120248 0.3080522 21 REDOX 192 0.81204623 0.28133795 0.111832164 21.1 REDOX.THIOREDOXIN 71 0.865739 1.0 0.47860807 21.1.1 REDOX.THIOREDOXIN.PDIL 18 0.11639481 0.50714827 0.8987542 21.2 REDOX.ASCORBATE AND GLUTATHIONE 68 0.6355691 1.0 0.3022178 21.2.1 REDOX.ASCORBATE AND GLUTATHIONE.ASCORBATE 31 0.97378373 0.15357254 0.021951912 21.4 REDOX.GLUTAREDOXINS 18 0.03566066 0.015854878 0.5712155 23 NUCLEOTIDE METABOLISM 178 0.79001296 0.56186783 0.2182673 23.1 NUCLEOTIDE METABOLISM.SYNTHESIS 38 0.29394066 0.07677214 0.39168483 23.1.2 NUCLEOTIDE METABOLISM.SYNTHESIS.PURINE 19 0.3899206 0.1483116 0.9853974 23.2 NUCLEOTIDE METABOLISM.DEGRADATION 28 0.22243725 0.13295907 0.4297664 23.3 NUCLEOTIDE METABOLISM.SALVAGE 47 0.9100552 0.9720768 0.5307119 23.3.2 NUCLEOTIDE METABOLISM.SALVAGE.NUCLEOSIDE KINASES 15 0.9240785 0.80476534 0.9097009 23.3.3 NUCLEOTIDE METABOLISM.SALVAGE.NUDIX HYDROLASES 18 0.9174856 0.99160016 0.38852617 23.4 NUCLEOTIDE METABOLISM.PHOSPHOTRANSFER AND PYROPHOSPHATASES 49 0.9453975 0.35428187 0.02319725 24 BIODEGRADATION OF XENOBIOTICS 15 0.13711818 0.25601062 0.1728091 25 C1-METABOLISM 39 0.99764985 1.0 0.291297 26.2 MISC.UDP GLUCOSYL AND GLUCORONYL TRANSFERASES 176 0.044461574 0.019341564 0.45163676 26.3 MISC.GLUCO-, GALACTO- AND MANNOSIDASES 130 0.40765294 0.20028627 0.092394724 26.3.2 MISC.GLUCO-, GALACTO- AND MANNOSIDASES.BETA-GALACTOSIDASE 17 0.081097156 0.06952089 0.430605 26.3.5 MISC.GLUCO-, GALACTO- AND MANNOSIDASES.GLYCOSYL HYDROLASE FAMILY 5 85 0.92061096 0.92020494 0.6596603 26.4 MISC.BETA 1,3 GLUCAN HYDROLASES 52 0.025961248 0.07076017 0.7332414 26.4.1 MISC.BETA 1,3 GLUCAN HYDROLASES.GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 44 0.028336989 0.065564066 0.7348826 26.6 MISC.O-METHYL TRANSFERASES 22 0.78966016 0.88503134 0.07961953 26.7 MISC.OXIDASES - COPPER, FLAVONE ETC 70 0.30189306 0.21327227 0.4218278 26.8 MISC.NITRILASES, NITRILE LYASES, BERBERINE BRIDGE ENZYMES, RETICULINE OXIDASES, TROPONINE REDUCTASES 38 0.051637497 0.038217314 0.22716403 26.9 MISC.GLUTATHIONE S TRANSFERASES 40 0.03317513 0.039047193 0.20766424 26.10 MISC.CYTOCHROME P450 119 0.024246166 7.2915544E-4 0.0022542768 26.12 MISC.PEROXIDASES 27 0.027615394 0.056105755 0.6902009 26.13 MISC.ACID AND OTHER PHOSPHATASES 79 0.639322 0.19922952 0.31368738 26.18 MISC.INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN 16 0.0044458658 1.0824537E-4 0.003358444 26.19 MISC.PLASTOCYANIN-LIKE 15 0.086591266 0.10583866 0.8955249 26.21 MISC.PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN 37 0.17679955 0.068686225 0.8111899 26.22 MISC.SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR) 45 0.63585365 0.44289443 0.5251607 26.24 MISC.GCN5-RELATED N-ACETYLTRANSFERASE 17 0.8986878 0.86903137 0.766867 26.27 MISC.CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN 16 0.10803617 0.13391183 0.84706146 26.28 MISC.GDSL-MOTIF LIPASE 47 0.119365975 0.17232317 0.54813707 27.1 RNA.PROCESSING 342 0.118505776 0.805975 0.61141616 27.1.1 RNA.PROCESSING.SPLICING 90 0.065363176 0.43361357 0.5291966 27.1.2 RNA.PROCESSING.RNA HELICASE 52 0.032197975 0.17591128 0.38564312 27.1.3 RNA.PROCESSING.3' END PROCESSING 32 0.99626154 0.9071301 0.9288297 27.1.19 RNA.PROCESSING.RIBONUCLEASES 50 0.9203822 1.0 0.9234147 27.2 RNA.TRANSCRIPTION 75 0.9909669 1.0 0.8804031 27.3.3 RNA.REGULATION OF TRANSCRIPTION.AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY 72 0.07309445 0.041192688 0.024880104 27.3.4 RNA.REGULATION OF TRANSCRIPTION.AUXIN RESPONSE TRANSCRIPTION FACTOR FAMILY (ARF) 29 0.07192795 0.72684777 0.23261657 27.3.5 RNA.REGULATION OF TRANSCRIPTION.ARR 23 0.6956013 0.7796251 0.5591851 27.3.6 RNA.REGULATION OF TRANSCRIPTION.BASIC HELIX-LOOP-HELIX FAMILY (BHLH) 119 0.642282 0.21512465 0.043818787 27.3.7 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) CONSTANS-LIKE ZINC FINGER FAMILY (CO-LIKE) 33 0.27605954 0.95222104 0.33406746 27.3.8 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) DOF ZINC FINGER FAMILY 32 0.14820386 0.033149853 0.06895708 27.3.9 RNA.REGULATION OF TRANSCRIPTION.C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY 30 0.9202063 0.9149697 0.85096824 27.3.11 RNA.REGULATION OF TRANSCRIPTION.C2H2 ZINC FINGER FAMILY 121 0.13347447 0.25416365 0.7371749 27.3.12 RNA.REGULATION OF TRANSCRIPTION.C3H ZINC FINGER FAMILY 34 0.32016993 0.0802099 0.09480323 27.3.20 RNA.REGULATION OF TRANSCRIPTION.G2-LIKE TRANSCRIPTION FACTOR FAMILY (GARP) 15 0.9617629 0.5896222 0.1994424 27.3.21 RNA.REGULATION OF TRANSCRIPTION.GRAS TRANSCRIPTION FACTOR FAMILY 33 0.1815287 0.17148495 0.90369797 27.3.22 RNA.REGULATION OF TRANSCRIPTION.HOMEOBOX TRANSCRIPTION FACTOR FAMILY (HB) 60 0.110887654 0.032452077 0.058449645 27.3.23 RNA.REGULATION OF TRANSCRIPTION.HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY (HSF) 28 0.31145793 0.106819816 0.16524027 27.3.25 RNA.REGULATION OF TRANSCRIPTION.MYB DOMAIN TRANSCRIPTION FACTOR FAMILY 91 0.18718722 0.13354778 0.3433032 27.3.26 RNA.REGULATION OF TRANSCRIPTION.MYB-RELATED TRANSCRIPTION FACTOR FAMILY 28 0.73340213 0.5422293 0.30073428 27.3.27 RNA.REGULATION OF TRANSCRIPTION.NAC DOMAIN TRANSCRIPTION FACTOR FAMILY 47 0.009335056 0.0 0.0027121562 27.3.29 RNA.REGULATION OF TRANSCRIPTION.TCP TRANSCRIPTION FACTOR FAMILY 28 0.576797 1.0 0.28363624 27.3.30 RNA.REGULATION OF TRANSCRIPTION.TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY (TRIHELIX) 21 0.98755217 1.0 0.99748003 27.3.32 RNA.REGULATION OF TRANSCRIPTION.WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY 53 0.0 0.0 0.7139528 27.3.35 RNA.REGULATION OF TRANSCRIPTION.BZIP TRANSCRIPTION FACTOR FAMILY 107 0.015358092 0.006303817 0.096126355 27.3.40 RNA.REGULATION OF TRANSCRIPTION.AUX/IAA FAMILY 27 0.1926128 0.65819466 0.007838126 27.3.44 RNA.REGULATION OF TRANSCRIPTION.CHROMATIN REMODELING FACTORS 41 0.5769101 0.985412 0.11089681 27.3.50 RNA.REGULATION OF TRANSCRIPTION.GENERAL TRANSCRIPTION 30 0.82093394 0.7769957 0.35650516 27.3.52 RNA.REGULATION OF TRANSCRIPTION.GLOBAL TRANSCRIPTION FACTOR GROUP 21 0.43999967 1.0 0.5584364 27.3.55 RNA.REGULATION OF TRANSCRIPTION.HDA 18 0.41831014 0.28271377 0.63301075 27.3.57 RNA.REGULATION OF TRANSCRIPTION.JUMONJI FAMILY 22 0.23499753 1.0 0.038073428 27.3.59 RNA.REGULATION OF TRANSCRIPTION.METHYL BINDING DOMAIN PROTEINS 19 0.9133036 0.94644946 0.66918737 27.3.60 RNA.REGULATION OF TRANSCRIPTION.NIN-LIKE BZIP-RELATED FAMILY 19 0.51542 0.16939957 0.5581751 27.3.63 RNA.REGULATION OF TRANSCRIPTION.PHD FINGER TRANSCRIPTION FACTOR 32 0.37899932 1.0 0.056706198 27.3.67 RNA.REGULATION OF TRANSCRIPTION.PUTATIVE TRANSCRIPTION REGULATOR 148 0.92084455 1.0 0.20497045 27.3.69 RNA.REGULATION OF TRANSCRIPTION.SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY 40 0.032524686 1.0 0.0136096375 27.3.99 RNA.REGULATION OF TRANSCRIPTION.UNCLASSIFIED 190 0.8715322 0.9748227 1.0 27.4 RNA.RNA BINDING 240 0.996429 1.0 0.70464265 28.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE 346 0.0122621795 0.0011042219 0.13580005 28.1.1 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE 75 0.68773705 1.0 0.034147106 28.1.1.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.RETROTRANSPOSON/TRANSPOSASE.HAT-LIKE TRANSPOSASE 63 0.78532755 0.99915564 0.045819487 28.1.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE 55 5.5980013E-4 0.0 0.0 28.1.3.2 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE 51 1.7269346E-4 0.0 0.0 28.1.3.2.3 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H3 21 0.0016797087 0.0 1.5625001E-4 28.1.3.2.4 DNA.SYNTHESIS/CHROMATIN STRUCTURE.HISTONE.CORE.H4 16 0.020640608 1.1316561E-4 1.25E-4 28.2 DNA.REPAIR 110 0.073341824 0.7284872 0.096766226 28.99 DNA.UNSPECIFIED 158 0.9814051 0.6972635 0.38168073 29.1 PROTEIN.AA ACTIVATION 80 0.07754269 0.052831385 0.5847728 29.2.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC 134 0.0 0.0 0.0 29.2.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST 94 0.0 0.0 1.7857144E-4 29.2.1.1.1.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.30S SUBUNIT 27 0.0 0.0 0.0014762966 29.2.1.1.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.CHLOROPLAST.50S SUBUNIT 66 0.0 0.0 1.3888889E-4 29.2.1.1.3 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR 23 0.92883414 0.104387775 0.008506156 29.2.1.1.3.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.PROKARYOTIC.UNKNOWN ORGANELLAR.50S SUBUNIT 16 0.9488194 0.29636392 0.022044923 29.2.1.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC 359 0.9973535 0.0 0.0 29.2.1.2.1 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.40S SUBUNIT 135 1.0 0.0 0.0 29.2.1.2.2 PROTEIN.SYNTHESIS.RIBOSOMAL PROTEIN.EUKARYOTIC.60S SUBUNIT 223 0.9986812 0.0 0.0 29.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS 187 0.10582101 0.02159551 0.5650544 29.2.2.2 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.ASSEMBLY FACTORS 18 0.6506112 0.999999 0.9806198 29.2.2.2.1 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.ASSEMBLY FACTORS.DEXD-BOX HELICASES 16 0.7491862 1.0 0.9892473 29.2.2.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS 150 0.08186086 0.006685409 0.2917789 29.2.2.3.3 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.METHYLOTRANSFERASES 99 0.105065525 0.011422412 0.16167387 29.2.2.3.4 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.WD-REPEAT PROTEINS 19 0.91232324 0.99923867 0.7459704 29.2.2.3.5 PROTEIN.SYNTHESIS.RIBOSOME BIOGENESIS.PRE-RRNA PROCESSING AND MODIFICATIONS.DEXD-BOX HELICASES 16 0.23572297 0.28065017 0.91921127 29.2.3 PROTEIN.SYNTHESIS.INITIATION 98 0.9658636 0.9998852 0.35909957 29.2.4 PROTEIN.SYNTHESIS.ELONGATION 44 0.99258333 1.0 1.0 29.3 PROTEIN.TARGETING 317 0.6661303 1.0 0.69404507 29.3.1 PROTEIN.TARGETING.NUCLEUS 62 0.24940251 1.0 0.29261422 29.3.2 PROTEIN.TARGETING.MITOCHONDRIA 30 0.53077406 1.0 0.034118805 29.3.3 PROTEIN.TARGETING.CHLOROPLAST 38 0.050828613 0.010055174 0.8852134 29.3.4 PROTEIN.TARGETING.SECRETORY PATHWAY 152 0.03965825 0.17059357 0.5672916 29.3.4.1 PROTEIN.TARGETING.SECRETORY PATHWAY.ER 18 0.06559885 0.1333733 0.8784445 29.3.4.2 PROTEIN.TARGETING.SECRETORY PATHWAY.GOLGI 17 0.43836585 0.25365385 0.92141974 29.3.4.3 PROTEIN.TARGETING.SECRETORY PATHWAY.VACUOLE 28 0.10077818 0.05359672 0.5084539 29.3.4.99 PROTEIN.TARGETING.SECRETORY PATHWAY.UNSPECIFIED 78 0.2454341 0.9121364 0.24580623 29.3.5 PROTEIN.TARGETING.PEROXISOMES 18 0.9525939 1.0 0.8149211 29.4.1 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE 368 0.18933047 0.10716552 0.24969138 29.4.1.57 PROTEIN.POSTRANSLATIONAL MODIFICATION.KINASE.RECEPTOR LIKE CYTOPLASMATIC KINASE VII 48 1.3384188E-4 0.009904807 0.35126272 29.5.1 PROTEIN.DEGRADATION.SUBTILASES 40 0.39283288 0.19428393 0.31187132 29.5.2 PROTEIN.DEGRADATION.AUTOPHAGY 22 0.11612758 0.040441904 0.11818822 29.5.3 PROTEIN.DEGRADATION.CYSTEINE PROTEASE 48 0.06745643 0.104007736 0.52526236 29.5.4 PROTEIN.DEGRADATION.ASPARTATE PROTEASE 48 0.36645013 0.51554185 0.20994762 29.5.5 PROTEIN.DEGRADATION.SERINE PROTEASE 75 0.9528005 1.0 0.8878754 29.5.7 PROTEIN.DEGRADATION.METALLOPROTEASE 42 0.17356671 1.0 0.5288458 29.5.9 PROTEIN.DEGRADATION.AAA TYPE 25 0.029034935 0.057617012 0.9502508 29.5.11.1 PROTEIN.DEGRADATION.UBIQUITIN.UBIQUITIN 38 0.11269284 0.6815847 0.12704876 29.5.11.3 PROTEIN.DEGRADATION.UBIQUITIN.E2 53 0.00812613 0.21067885 0.033184744 29.5.11.4.1 PROTEIN.DEGRADATION.UBIQUITIN.E3.HECT 15 0.9764751 0.05364892 0.008390166 29.5.11.4.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.RING 423 0.17595464 0.10730416 0.42867264 29.5.11.4.3 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF 240 0.7339507 0.6283728 0.07638211 29.5.11.4.3.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.SCF.FBOX 219 0.65795904 0.60965014 0.05712159 29.5.11.4.5 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3 23 0.18370198 0.046761144 0.46090564 29.5.11.4.5.2 PROTEIN.DEGRADATION.UBIQUITIN.E3.BTB/POZ CULLIN3.BTB/POZ 17 0.4997717 0.092705384 0.31601885 29.5.11.5 PROTEIN.DEGRADATION.UBIQUITIN.UBIQUITIN PROTEASE 47 0.9932622 0.3460652 0.17907405 29.5.11.20 PROTEIN.DEGRADATION.UBIQUITIN.PROTEASOM 78 0.013309115 0.6270864 0.06610675 29.6 PROTEIN.FOLDING 99 0.32409665 0.09689289 0.05879105 29.7 PROTEIN.GLYCOSYLATION 62 0.26944944 0.50383 0.72699773 29.8 PROTEIN.ASSEMBLY AND COFACTOR LIGATION 36 0.67659336 0.14963847 0.0783674 30.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY 41 0.03297991 0.027456196 0.18390733 30.1.1 SIGNALLING.IN SUGAR AND NUTRIENT PHYSIOLOGY.MISC 39 0.024945958 0.019286465 0.16357456 30.2.2 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT II 19 0.14115824 0.6218419 0.5443167 30.2.3 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT III 45 0.0 1.18554446E-4 0.28105342 30.2.6 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VI 32 0.36622906 0.029873006 0.13298897 30.2.8 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT VIII 23 0.5117352 0.88026565 0.17492251 30.2.10 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT X 24 0.22195348 0.20915486 0.67286885 30.2.11 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT XI 46 0.48261216 0.19897479 0.07446226 30.2.12 SIGNALLING.RECEPTOR KINASES.LEUCINE RICH REPEAT XII 15 0.073224686 0.42917037 0.88525724 30.2.16 SIGNALLING.RECEPTOR KINASES.CATHARANTHUS ROSEUS-LIKE RLK1 28 0.9867045 0.9317515 0.66207045 30.2.17 SIGNALLING.RECEPTOR KINASES.DUF 26 72 0.44805074 0.8762295 0.568475 30.2.19 SIGNALLING.RECEPTOR KINASES.LEGUME-LECTIN 25 0.014431678 5.311018E-4 0.30005696 30.2.24 SIGNALLING.RECEPTOR KINASES.S-LOCUS GLYCOPROTEIN LIKE 26 0.03720701 0.10619319 0.34974986 30.2.99 SIGNALLING.RECEPTOR KINASES.MISC 23 0.55606467 0.21736674 0.3824429 30.3 SIGNALLING.CALCIUM 238 0.02944596 0.16819595 0.111446895 30.4 SIGNALLING.PHOSPHINOSITIDES 58 0.315457 0.1866052 0.07532742 30.4.1 SIGNALLING.PHOSPHINOSITIDES.PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 22 0.27307945 0.65782493 0.026724309 30.5 SIGNALLING.G-PROTEINS 251 0.99765766 1.0 0.9244571 30.6 SIGNALLING.MAP KINASES 70 0.49721476 0.061934687 0.060562007 30.7 SIGNALLING.14-3-3 PROTEINS 21 0.98748195 1.0 0.853674 30.11 SIGNALLING.LIGHT 137 0.66970533 0.4591947 0.024941403 30.11.1 SIGNALLING.LIGHT.COP9 SIGNALOSOME 15 0.63214403 0.61460114 0.9983594 30.99 SIGNALLING.UNSPECIFIED 16 0.7511749 0.44194826 0.2085988 31.1 CELL.ORGANISATION 348 0.1840214 0.77023476 0.64589995 31.2 CELL.DIVISION 104 0.9954293 0.91585565 0.31923407 31.3 CELL.CYCLE 105 0.36183563 0.059907183 0.076707095 31.3.1 CELL.CYCLE.PEPTIDYLPROLYL ISOMERASE 38 0.99491733 0.733659 0.009380837 31.4 CELL.VESICLE TRANSPORT 177 0.13509499 0.44333214 0.7004729 31.5 CELL.CELL DEATH 20 0.8998763 1.0 0.92327636 33 DEVELOPMENT 492 0.36962172 0.22350915 0.61670023 33.1 DEVELOPMENT.STORAGE PROTEINS 16 0.034799278 0.0039873696 0.31968057 33.2 DEVELOPMENT.LATE EMBRYOGENESIS ABUNDANT 20 0.7179628 0.9947229 0.024278346 33.3 DEVELOPMENT.SQUAMOSA PROMOTER BINDING LIKE (SPL) 23 0.9727676 0.6269394 0.06545853 33.99 DEVELOPMENT.UNSPECIFIED 426 0.47593555 0.34144923 0.73345125 34.1 TRANSPORT.P- AND V-ATPASES 65 0.7432009 1.0 0.9959724 34.1.1 TRANSPORT.P- AND V-ATPASES.H+-TRANSPORTING TWO-SECTOR ATPASE 26 0.47309855 0.9175175 0.17184214 34.2 TRANSPORT.SUGARS 53 0.10484578 0.039852962 0.19666202 34.3 TRANSPORT.AMINO ACIDS 57 0.23792817 0.0090678055 0.006438417 34.4 TRANSPORT.NITRATE 15 0.1131374 0.009838893 0.008825157 34.7 TRANSPORT.PHOSPHATE 18 0.16982307 0.10428948 0.86133313 34.8 TRANSPORT.METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE 41 0.9154508 1.0 0.55601496 34.9 TRANSPORT.METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE 87 0.56605786 0.6167796 0.8910118 34.10 TRANSPORT.NUCLEOTIDES 16 0.19273917 0.17346205 0.5503943 34.12 TRANSPORT.METAL 82 0.066981815 0.019830966 0.38803294 34.13 TRANSPORT.PEPTIDES AND OLIGOPEPTIDES 46 0.01644566 0.0014277414 0.094972834 34.14 TRANSPORT.UNSPECIFIED CATIONS 48 0.56452 0.75006574 0.6627548 34.15 TRANSPORT.POTASSIUM 51 0.8253146 0.8823735 0.43604922 34.16 TRANSPORT.ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS 98 0.34510082 0.10757597 0.03920121 34.18 TRANSPORT.UNSPECIFIED ANIONS 29 0.9919179 0.79485744 0.17321995 34.19 TRANSPORT.MAJOR INTRINSIC PROTEINS 40 0.63743156 0.3405614 0.20670715 34.19.1 TRANSPORT.MAJOR INTRINSIC PROTEINS.PIP 22 0.22007534 0.0028360193 0.007071973 34.22 TRANSPORT.CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS 19 0.009147273 0.007604857 0.09648176 34.99 TRANSPORT.MISC 81 0.114433676 0.10250442 0.8498203 35.1.3 NOT ASSIGNED.NO ONTOLOGY.ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN 22 0.5285411 0.44025123 0.92675406 35.1.5 NOT ASSIGNED.NO ONTOLOGY.PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 344 0.0 0.0017006496 0.17218587 35.1.27 NOT ASSIGNED.NO ONTOLOGY.TETRATRICOPEPTIDE REPEAT (TPR) 177 0.001440207 0.048738062 0.6724545 35.1.40 NOT ASSIGNED.NO ONTOLOGY.GLYCINE RICH PROTEINS 17 0.086896986 0.03836053 0.17253765 35.1.41 NOT ASSIGNED.NO ONTOLOGY.HYDROXYPROLINE RICH PROTEINS 35 0.9237401 1.0 0.9347313 35.1.42 NOT ASSIGNED.NO ONTOLOGY.PROLINE RICH FAMILY 16 0.96412826 1.0 0.9701698
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Created: 11th Apr 2022 at 13:41
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
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National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Advanced Projects list for this Data file with search and filtering
SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
Advanced Investigations list for this Data file with search and filtering
Short Name: T21_SXPsysbio Title: Use a systems biology approach to identify regulatory bottlenecks in SxPv1 Description: Samples from SXPv1.0 plants as well as sister nulls (progeny from the original transgenic event in which the transgene has segregated) and wild type will be grown and leaf samples taken for RNA extraction and profiling of primary metabolites and volatiles (target pheromones as well as potential derivatives) (P1, P5). Phenotypic and GC-MS data will be obtained and analysed from ...
Submitter: Marko Petek
Studies: Investigation files, _S_P1_SPv10T0andT1, _S_P1_SPv10T2andT3, _S_P1_SPv1TransientExp, _S_P1_SxPAltAcTransferases, _S_P1_SxPv10vsSxP12, _S_P1_SxPv12T2, _S_P4_CoExpNetViz, _S_P4_DiNAR, _S_P4_GAtreat, _S_P4_SxP10-newG-DE, _S_P4_SxP10-oldG-DE, _S_P4_SxP1012-finalG, _S_P4_SxP12-newG-DE
Assays: _A_00_SxP_photos-phenotyping, _A_01_RNA1-RNAisol, _A_01_SxP_Data_Only-CoExp, _A_01_SxPv12_fastq-QC, _A_01_mapping-CLC, _A_01_toNewGenome-CLC-mapping, _A_02_FastQC-bioinfo, _A_02_Nb_datasets-CoExp, _A_02_SxPv12_mapping-CLC, _A_02_limmavoomDE-R, _A_02a_limmavoom-multim-R, _A_02a_limmavoomDEbylines-R, _A_02b_limmavoom-uniquem-R, _A_03_MapMan-visualisation, _A_03_NewGenome-MapMan, _A_03_SxPv12_limmavoom_DE-R, _A_03_mapping-CLC, _A_03a_mapping2-STAR, _A_04_GSEA-Stat, _A_04_MapManBINenrich-GSEA, _A_04_Mercator-bioinfo, _A_04_SxPv12_GeneSetEnrichment-RNAseg-GSEA, _A_05_DEstat-R, _A_05_Phenotype_analysis-Stat, _A_05_VOCcomp-Bioinfo, _A_05a_DEstat2-R, _A_05b_DElow-wt-R, _A_06_MapMan-bioinfo, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _A_07_transgenes-CLC, _A_CKN-DiNAR, _A_CKN_NbL35-DiNAR, _A_LeavesSxPv10vsv12-GCMS, _A_P4_v10v12-phenotyping, _A_PIS-DiNAR, _A_PIS-SxPv12-DiNAR, _A_PIS_NbL35-DiNAR, _A_RootsSxPv10vsv12-GCMS, _A_SP10T0Analysis-GCMS, _A_SP10T1Analysis-GCMS, _A_SPv10EaDActAnalysis-GCMS, _A_SPv10T2Analysis-GCMS, _A_SPv10T3Analysis-GCMS, _A_SPv10_phenotyping-Images, _A_SxPAlternativeAcetyltransferases-GCMS, _A_SxPv10vsv12-phenotyping, _A_SxPv12ScreeningT2-GCMS, _A_TransientSPv11andSPv12-GCMS, _I_T21_SXPsysbio-files, _S_P1_SPv10T0andT1-files, _S_P1_SPv10T2andT3-files, _S_P1_SPv1TransientExp-files, _S_P1_SxPAltAcTransferases-files, _S_P1_SxPv10vsSxP12-files, _S_P1_SxPv12T2-files, _S_P4_CoExpNetViz-files, _S_P4_DiNAR-files, _S_P4_GAtreat-files, _S_P4_SxP10-newG-DE-files, _S_P4_SxP10-oldG-DE-files, _S_P4_SxP1012-finalG-files, _S_P4_SxP12-newG-DE-files
Advanced Studies list for this Data file with search and filtering
Short Name: P4_SxP10-newG-DE Title: SxPv1.0 RNA-seq analysis using the new Nb genome Description: Analysis of RNA-seq data (Illumina short reads) of two lines of SexyPlants (SxP v1.0) utilising the not yet published now high quality genome of Nicotiana benthamiana from the Newcotiana project. Raw Data: Principal investigator: Ĺ pela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T21_SXPsysbio
Assays: _A_01_toNewGenome-CLC-mapping, _A_02_limmavoomDE-R, _A_02a_limmavoomDEbylines-R, _A_03_NewGenome-MapMan, _A_04_GSEA-Stat, _A_05_Phenotype_analysis-Stat, _A_06_SxPv1-0_Illumina-Centrifuge, _A_07_NbAUSv1-0-InterPro, _S_P4_SxP10-newG-DE-files
Advanced Assays list for this Data file with search and filtering
Short Name: 04_GSEA-Stat Assay Class: DRY Assay Type: Stat Title: GSEA analysis of SxP data Description: Gene sets: MapMan3 BINs from mapping of NbV1 genome, Data: TMM-normalized total counts of mapping SxPv1.0 data to NbV1 genome. pISA Assay creation date: 2020-01-31 pISA Assay creator: Mojca Juteršek Analyst: Mojca Juteršek Phenodata: ../../phenodata_20181212.xlsx Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T21_SXPsysbio
Study: _S_P4_SxP10-newG-DE
