output/quast/Lactococcus/report.txt

Version 1

All statistics are based on contigs of size >= 200 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly                        spades      
# contigs (>= 0 bp)             245         
# contigs (>= 1000 bp)          139         
# contigs (>= 5000 bp)          60          
# contigs (>= 10000 bp)         38          
# contigs (>= 25000 bp)         27          
# contigs (>= 50000 bp)         13          
Total length (>= 0 bp)          2541749     
Total length (>= 1000 bp)       2482734     
Total length (>= 5000 bp)       2317176     
Total length (>= 10000 bp)      2162610     
Total length (>= 25000 bp)      1981093     
Total length (>= 50000 bp)      1476297     
# contigs                       242         
Largest contig                  256070      
Total length                    2541371     
GC (%)                          34.97       
N50                             69806       
N75                             27770       
L50                             10          
L75                             25          
# total reads                   182073123   
# left                          91023201    
# right                         91023201    
Mapped (%)                      99.69       
Properly paired (%)             98.29       
Avg. coverage depth             10684       
Coverage >= 1x (%)              100.0       
# N's per 100 kbp               0.00        
Complete BUSCO (%)              97.30       
Partial BUSCO (%)               0.00        
# predicted genes (unique)      952         
# predicted genes (>= 0 bp)     949 + 3 part
# predicted genes (>= 300 bp)   900 + 3 part
# predicted genes (>= 1500 bp)  346 + 0 part
# predicted genes (>= 3000 bp)  88 + 0 part 
# predicted rRNA genes          7 + 0 part