output/quast/Enterobacter/report.txt

Version 1

All statistics are based on contigs of size >= 200 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).

Assembly                        spades          
# contigs (>= 0 bp)             15269           
# contigs (>= 1000 bp)          2357            
# contigs (>= 5000 bp)          21              
# contigs (>= 10000 bp)         0               
# contigs (>= 25000 bp)         0               
# contigs (>= 50000 bp)         0               
Total length (>= 0 bp)          9480477         
Total length (>= 1000 bp)       3815843         
Total length (>= 5000 bp)       133432          
Total length (>= 10000 bp)      0               
Total length (>= 25000 bp)      0               
Total length (>= 50000 bp)      0               
# contigs                       15134           
Largest contig                  9825            
Total length                    9459172         
GC (%)                          56.06           
N50                             801             
N75                             452             
L50                             3376            
L75                             7317            
# total reads                   68205781        
# left                          34082806        
# right                         34082806        
Mapped (%)                      99.49           
Properly paired (%)             80.31           
Avg. coverage depth             1067            
Coverage >= 1x (%)              99.98           
# N's per 100 kbp               0.00            
Complete BUSCO (%)              54.73           
Partial BUSCO (%)               16.22           
# predicted genes (unique)      11813           
# predicted genes (>= 0 bp)     8618 + 3198 part
# predicted genes (>= 300 bp)   6085 + 2406 part
# predicted genes (>= 1500 bp)  118 + 28 part   
# predicted genes (>= 3000 bp)  7 + 0 part      
# predicted rRNA genes          11 + 3 part