output/params.txt
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_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/

SEEK ID: https://fairdomhub.org/data_files/4763?version=1

Filename: output/params.txt

Format: Plain text document

Size: 1.33 KB

Command line: /home/administrator/SPAdes-3.13.0-Linux/bin/spades.py	--meta	-k	21,41,71,101	-m	230	-t	32	-o	/DATA/markop/CPB_metaSpades/output	-1	/DATA/markop/CPB_metaSpades/input/unmerged_1.fq	-2	/DATA/markop/CPB_metaSpades/input/unmerged_2.fq	-s	/DATA/markop/CPB_metaSpades/input/merged.fq

System information:
  SPAdes version: 3.13.0
  Python version: 2.7.15
  OS: Linux-4.13.0-41-generic-x86_64-with-debian-stretch-sid

Output dir: /DATA/markop/CPB_metaSpades/output
Mode: read error correction and assembling
Debug mode is turned OFF

Dataset parameters:
  Metagenomic mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/DATA/markop/CPB_metaSpades/input/unmerged_1.fq']
      right reads: ['/DATA/markop/CPB_metaSpades/input/unmerged_2.fq']
      interlaced reads: not specified
      single reads: ['/DATA/markop/CPB_metaSpades/input/merged.fq']
      merged reads: not specified
Read error correction parameters:
  Iterations: 1
  PHRED offset will be auto-detected
  Corrected reads will be compressed
Assembly parameters:
  k: [21, 41, 71, 101]
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /DATA/markop/CPB_metaSpades/output/tmp
  Threads: 32
  Memory limit (in Gb): 230

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