/intermediate/indexPGSC.log Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_07_Desiree-mapping
SEEK ID: https://fairdomhub.org/data_files/3558?version=1
Filename:
intermediate/indexPGSC.log
Format: Plain text document
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STAR version=2.7.3a STAR compilation time,server,dir=Tue Oct 8 14:26:19 EDT 2019 vega:/home/dobin/data/STAR/STARcode/STAR.master/source ##### Command Line: STAR --runThreadN 30 --runMode genomeGenerate --genomeDir ../intermediate/PGSC/ --genomeFastaFiles ../input/PGSC_DM_v3.4_transcript-update_representative.fasta --limitGenomeGenerateRAM=242371378560 ##### Initial USER parameters from Command Line: ###### All USER parameters from Command Line: runThreadN 30 ~RE-DEFINED runMode genomeGenerate ~RE-DEFINED genomeDir ../intermediate/PGSC/ ~RE-DEFINED genomeFastaFiles ../input/PGSC_DM_v3.4_transcript-update_representative.fasta ~RE-DEFINED limitGenomeGenerateRAM 242371378560 ~RE-DEFINED ##### Finished reading parameters from all sources ##### Final user re-defined parameters-----------------: runMode genomeGenerate runThreadN 30 genomeDir ../intermediate/PGSC/ genomeFastaFiles ../input/PGSC_DM_v3.4_transcript-update_representative.fasta limitGenomeGenerateRAM 242371378560 ------------------------------- ##### Final effective command line: STAR --runMode genomeGenerate --runThreadN 30 --genomeDir ../intermediate/PGSC/ --genomeFastaFiles ../input/PGSC_DM_v3.4_transcript-update_representative.fasta --limitGenomeGenerateRAM 242371378560 ---------------------------------------- Finished loading and checking parameters Feb 05 12:12:17 ... starting to generate Genome files ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 0 "PGSC0003DMT400000002" chrStart: 0 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1 "PGSC0003DMT400000004" chrStart: 262144 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 2 "PGSC0003DMT400000009" chrStart: 524288 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 3 "PGSC0003DMT400000010" chrStart: 786432 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 4 "PGSC0003DMT400000012" chrStart: 1048576 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 5 "PGSC0003DMT400000016" chrStart: 1310720 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 6 "PGSC0003DMT400000019" chrStart: 1572864 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 7 "PGSC0003DMT400000024" chrStart: 1835008 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 8 "PGSC0003DMT400000025" chrStart: 2097152 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 9 "PGSC0003DMT400000028" chrStart: 2359296 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 10 "PGSC0003DMT400000030" chrStart: 2621440 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 11 "PGSC0003DMT400000034" chrStart: 2883584 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 12 "PGSC0003DMT400000036" chrStart: 3145728 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 13 "PGSC0003DMT400000041" chrStart: 3407872 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 14 "PGSC0003DMT400000042" chrStart: 3670016 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 15 "PGSC0003DMT400000043" chrStart: 3932160 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 16 "PGSC0003DMT400000049" chrStart: 4194304 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 17 "PGSC0003DMT400000051" chrStart: 4456448 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 18 "PGSC0003DMT400000054" chrStart: 4718592 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 19 "PGSC0003DMT400000060" chrStart: 4980736 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 20 "PGSC0003DMT400000061" chrStart: 5242880 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 21 "PGSC0003DMT400000063" chrStart: 5505024 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 22 "PGSC0003DMT400000064" chrStart: 5767168 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 23 "PGSC0003DMT400000066" chrStart: 6029312 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 24 "PGSC0003DMT400000067" chrStart: 6291456 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 25 "PGSC0003DMT400000078" chrStart: 6553600 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 26 "PGSC0003DMT400000080" chrStart: 6815744 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 27 "PGSC0003DMT400000083" chrStart: 7077888 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 28 "PGSC0003DMT400000086" chrStart: 7340032 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 29 "PGSC0003DMT400000089" chrStart: 7602176 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 30 "PGSC0003DMT400000094" chrStart: 7864320 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 31 "PGSC0003DMT400000098" chrStart: 8126464 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 32 "PGSC0003DMT400000107" chrStart: 8388608 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 33 "PGSC0003DMT400000108" chrStart: 8650752 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 34 "PGSC0003DMT400000110" chrStart: 8912896 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 35 "PGSC0003DMT400000116" chrStart: 9175040 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 36 "PGSC0003DMT400000118" chrStart: 9437184 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 37 "PGSC0003DMT400000120" chrStart: 9699328 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38 "PGSC0003DMT400000123" chrStart: 9961472 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39 "PGSC0003DMT400000126" chrStart: 10223616 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 40 "PGSC0003DMT400000129" chrStart: 10485760 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 41 "PGSC0003DMT400000130" chrStart: 10747904 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 42 "PGSC0003DMT400000135" chrStart: 11010048 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 43 "PGSC0003DMT400000136" chrStart: 11272192 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 44 "PGSC0003DMT400000143" chrStart: 11534336 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 45 "PGSC0003DMT400000146" chrStart: 11796480 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 46 "PGSC0003DMT400000151" chrStart: 12058624 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 47 "PGSC0003DMT400000152" chrStart: 12320768 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 48 "PGSC0003DMT400000154" chrStart: 12582912 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 49 "PGSC0003DMT400000156" chrStart: 12845056 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 50 "PGSC0003DMT400000158" chrStart: 13107200 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 51 "PGSC0003DMT400000163" chrStart: 13369344 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 52 "PGSC0003DMT400000167" chrStart: 13631488 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 53 "PGSC0003DMT400000170" chrStart: 13893632 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 54 "PGSC0003DMT400000171" chrStart: 14155776 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 55 "PGSC0003DMT400000176" chrStart: 14417920 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 56 "PGSC0003DMT400000186" chrStart: 14680064 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 57 "PGSC0003DMT400000189" chrStart: 14942208 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 58 "PGSC0003DMT400000192" chrStart: 15204352 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 59 "PGSC0003DMT400000194" chrStart: 15466496 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 60 "PGSC0003DMT400000196" chrStart: 15728640 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 61 "PGSC0003DMT400000197" chrStart: 15990784 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 62 "PGSC0003DMT400000200" chrStart: 16252928 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 63 "PGSC0003DMT400000205" chrStart: 16515072 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 64 "PGSC0003DMT400000210" chrStart: 16777216 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 65 "PGSC0003DMT400000212" chrStart: 17039360 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 66 "PGSC0003DMT400000215" chrStart: 17301504 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 67 "PGSC0003DMT400000218" chrStart: 17563648 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 68 "PGSC0003DMT400000220" chrStart: 17825792 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 69 "PGSC0003DMT400000222" chrStart: 18087936 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 70 "PGSC0003DMT400000225" chrStart: 18350080 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 71 "PGSC0003DMT400000226" chrStart: 18612224 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 72 "PGSC0003DMT400000227" chrStart: 18874368 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 73 "PGSC0003DMT400000229" chrStart: 19136512 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 74 "PGSC0003DMT400000230" chrStart: 19398656 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 75 "PGSC0003DMT400000233" chrStart: 19660800 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 76 "PGSC0003DMT400000234" chrStart: 19922944 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 77 "PGSC0003DMT400000235" chrStart: 20185088 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 78 "PGSC0003DMT400000237" chrStart: 20447232 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 79 "PGSC0003DMT400000240" chrStart: 20709376 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 80 "PGSC0003DMT400000241" chrStart: 20971520 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 81 "PGSC0003DMT400000243" chrStart: 21233664 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 82 "PGSC0003DMT400000247" chrStart: 21495808 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 83 "PGSC0003DMT400000249" chrStart: 21757952 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 84 "PGSC0003DMT400000251" chrStart: 22020096 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 85 "PGSC0003DMT400000252" chrStart: 22282240 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 86 "PGSC0003DMT400000254" chrStart: 22544384 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 87 "PGSC0003DMT400000256" chrStart: 22806528 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 88 "PGSC0003DMT400000259" chrStart: 23068672 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 89 "PGSC0003DMT400000261" chrStart: 23330816 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 90 "PGSC0003DMT400000264" chrStart: 23592960 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 91 "PGSC0003DMT400000265" chrStart: 23855104 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 92 "PGSC0003DMT400000266" chrStart: 24117248 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 93 "PGSC0003DMT400000269" chrStart: 24379392 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 94 "PGSC0003DMT400000273" chrStart: 24641536 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 95 "PGSC0003DMT400000274" chrStart: 24903680 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 96 "PGSC0003DMT400000276" chrStart: 25165824 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 97 "PGSC0003DMT400000279" chrStart: 25427968 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 98 "PGSC0003DMT400000281" chrStart: 25690112 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 99 "PGSC0003DMT400000283" chrStart: 25952256 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 100 "PGSC0003DMT400000286" chrStart: 26214400 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 101 "PGSC0003DMT400000287" chrStart: 26476544 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 102 "PGSC0003DMT400000290" chrStart: 26738688 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 103 "PGSC0003DMT400000291" chrStart: 27000832 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 104 "PGSC0003DMT400000293" chrStart: 27262976 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 105 "PGSC0003DMT400000295" chrStart: 27525120 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 106 "PGSC0003DMT400000296" chrStart: 27787264 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 107 "PGSC0003DMT400000299" chrStart: 28049408 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 108 "PGSC0003DMT400000301" chrStart: 28311552 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 109 "PGSC0003DMT400000307" chrStart: 28573696 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 110 "PGSC0003DMT400000310" chrStart: 28835840 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 111 "PGSC0003DMT400000311" chrStart: 29097984 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 112 "PGSC0003DMT400000313" chrStart: 29360128 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 113 "PGSC0003DMT400000314" chrStart: 29622272 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 114 "PGSC0003DMT400000316" chrStart: 29884416 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 115 "PGSC0003DMT400000320" chrStart: 30146560 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 116 "PGSC0003DMT400000326" chrStart: 30408704 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 117 "PGSC0003DMT400000330" chrStart: 30670848 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 118 "PGSC0003DMT400000331" chrStart: 30932992 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 119 "PGSC0003DMT400000333" chrStart: 31195136 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 120 "PGSC0003DMT400000335" chrStart: 31457280 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 121 "PGSC0003DMT400000336" chrStart: 31719424 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 122 "PGSC0003DMT400000338" chrStart: 31981568 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 123 "PGSC0003DMT400000339" chrStart: 32243712 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 124 "PGSC0003DMT400000342" chrStart: 32505856 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 125 "PGSC0003DMT400000343" chrStart: 32768000 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 126 "PGSC0003DMT400000345" chrStart: 33030144 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 127 "PGSC0003DMT400000347" chrStart: 33292288 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 128 "PGSC0003DMT400000349" chrStart: 33554432 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 129 "PGSC0003DMT400000350" chrStart: 33816576 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 130 "PGSC0003DMT400000351" chrStart: 34078720 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 131 "PGSC0003DMT400000352" chrStart: 34340864 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 132 "PGSC0003DMT400000356" chrStart: 34603008 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 133 "PGSC0003DMT400000359" chrStart: 34865152 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 134 "PGSC0003DMT400000360" chrStart: 35127296 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 135 "PGSC0003DMT400000363" chrStart: 35389440 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 136 "PGSC0003DMT400000364" chrStart: 35651584 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 137 "PGSC0003DMT400000365" chrStart: 35913728 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 138 "PGSC0003DMT400000367" chrStart: 36175872 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 139 "PGSC0003DMT400000376" chrStart: 36438016 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 140 "PGSC0003DMT400000377" chrStart: 36700160 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 141 "PGSC0003DMT400000378" chrStart: 36962304 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 142 "PGSC0003DMT400000380" chrStart: 37224448 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 143 "PGSC0003DMT400000381" chrStart: 37486592 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 144 "PGSC0003DMT400000383" chrStart: 37748736 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 145 "PGSC0003DMT400000387" chrStart: 38010880 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 146 "PGSC0003DMT400000390" chrStart: 38273024 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 147 "PGSC0003DMT400000391" chrStart: 38535168 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 148 "PGSC0003DMT400000396" chrStart: 38797312 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 149 "PGSC0003DMT400000414" chrStart: 39059456 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 150 "PGSC0003DMT400000418" chrStart: 39321600 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 151 "PGSC0003DMT400000423" chrStart: 39583744 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 152 "PGSC0003DMT400000425" chrStart: 39845888 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 153 "PGSC0003DMT400000430" chrStart: 40108032 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 154 "PGSC0003DMT400000436" chrStart: 40370176 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 155 "PGSC0003DMT400000441" chrStart: 40632320 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 156 "PGSC0003DMT400000446" chrStart: 40894464 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 157 "PGSC0003DMT400000447" chrStart: 41156608 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 158 "PGSC0003DMT400000448" chrStart: 41418752 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 159 "PGSC0003DMT400000450" chrStart: 41680896 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 160 "PGSC0003DMT400000453" chrStart: 41943040 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 161 "PGSC0003DMT400000457" chrStart: 42205184 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 162 "PGSC0003DMT400000462" chrStart: 42467328 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 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1972 "PGSC0003DMT400005534" chrStart: 516947968 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1973 "PGSC0003DMT400005536" chrStart: 517210112 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1974 "PGSC0003DMT400005538" chrStart: 517472256 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1975 "PGSC0003DMT400005542" chrStart: 517734400 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1976 "PGSC0003DMT400005544" chrStart: 517996544 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1977 "PGSC0003DMT400005546" chrStart: 518258688 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1978 "PGSC0003DMT400005547" chrStart: 518520832 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1979 "PGSC0003DMT400005549" chrStart: 518782976 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 1980 "PGSC0003DMT400005551" chrStart: 519045120 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 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38881 "PGSC0003DMT400097596" chrStart: 10192420864 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38882 "PGSC0003DMT400097597" chrStart: 10192683008 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38883 "PGSC0003DMT400097598" chrStart: 10192945152 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38884 "PGSC0003DMT400097599" chrStart: 10193207296 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38885 "PGSC0003DMT400097600" chrStart: 10193469440 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38886 "PGSC0003DMT400097601" chrStart: 10193731584 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38887 "PGSC0003DMT400097603" chrStart: 10193993728 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38888 "PGSC0003DMT400097604" chrStart: 10194255872 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38889 "PGSC0003DMT400097605" chrStart: 10194518016 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38890 "PGSC0003DMT400097606" chrStart: 10194780160 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38891 "PGSC0003DMT400097608" chrStart: 10195042304 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38892 "PGSC0003DMT400097610" chrStart: 10195304448 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38893 "PGSC0003DMT400097611" chrStart: 10195566592 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38894 "PGSC0003DMT400097612" chrStart: 10195828736 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38895 "PGSC0003DMT400097613" chrStart: 10196090880 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38896 "PGSC0003DMT400097614" chrStart: 10196353024 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38897 "PGSC0003DMT400097615" chrStart: 10196615168 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38898 "PGSC0003DMT400097616" chrStart: 10196877312 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38899 "PGSC0003DMT400097617" chrStart: 10197139456 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38900 "PGSC0003DMT400097618" chrStart: 10197401600 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38901 "PGSC0003DMT400097619" chrStart: 10197663744 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38902 "PGSC0003DMT400097620" chrStart: 10197925888 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38903 "PGSC0003DMT400097621" chrStart: 10198188032 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38904 "PGSC0003DMT400097622" chrStart: 10198450176 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38905 "PGSC0003DMT400097623" chrStart: 10198712320 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38906 "PGSC0003DMT400097624" chrStart: 10198974464 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38907 "PGSC0003DMT400097626" chrStart: 10199236608 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38908 "PGSC0003DMT400097628" chrStart: 10199498752 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38909 "PGSC0003DMT400097629" chrStart: 10199760896 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38910 "PGSC0003DMT400097631" chrStart: 10200023040 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38911 "PGSC0003DMT400097633" chrStart: 10200285184 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38912 "PGSC0003DMT400097634" chrStart: 10200547328 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38913 "PGSC0003DMT400097635" chrStart: 10200809472 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38914 "PGSC0003DMT400097636" chrStart: 10201071616 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38915 "PGSC0003DMT400097638" chrStart: 10201333760 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38916 "PGSC0003DMT400097639" chrStart: 10201595904 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38917 "PGSC0003DMT400097640" chrStart: 10201858048 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38918 "PGSC0003DMT400097642" chrStart: 10202120192 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38919 "PGSC0003DMT400097643" chrStart: 10202382336 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38920 "PGSC0003DMT400097644" chrStart: 10202644480 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38921 "PGSC0003DMT400097645" chrStart: 10202906624 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38922 "PGSC0003DMT400097646" chrStart: 10203168768 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38923 "PGSC0003DMT400097647" chrStart: 10203430912 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38924 "PGSC0003DMT400097648" chrStart: 10203693056 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38925 "PGSC0003DMT400097649" chrStart: 10203955200 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38926 "PGSC0003DMT400097650" chrStart: 10204217344 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38927 "PGSC0003DMT400097652" chrStart: 10204479488 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38928 "PGSC0003DMT400097653" chrStart: 10204741632 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38929 "PGSC0003DMT400097654" chrStart: 10205003776 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38930 "PGSC0003DMT400097655" chrStart: 10205265920 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38931 "PGSC0003DMT400097657" chrStart: 10205528064 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38932 "PGSC0003DMT400097659" chrStart: 10205790208 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38933 "PGSC0003DMT400097660" chrStart: 10206052352 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38934 "PGSC0003DMT400097661" chrStart: 10206314496 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38935 "PGSC0003DMT400097662" chrStart: 10206576640 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38936 "PGSC0003DMT400097663" chrStart: 10206838784 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38937 "PGSC0003DMT400097664" chrStart: 10207100928 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38938 "PGSC0003DMT400097665" chrStart: 10207363072 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38939 "PGSC0003DMT400097667" chrStart: 10207625216 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38940 "PGSC0003DMT400097668" chrStart: 10207887360 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38941 "PGSC0003DMT400097669" chrStart: 10208149504 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38942 "PGSC0003DMT400097671" chrStart: 10208411648 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38943 "PGSC0003DMT400097672" chrStart: 10208673792 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38944 "PGSC0003DMT400097673" chrStart: 10208935936 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38945 "PGSC0003DMT400097674" chrStart: 10209198080 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38946 "PGSC0003DMT400097675" chrStart: 10209460224 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38947 "PGSC0003DMT400097678" chrStart: 10209722368 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38948 "PGSC0003DMT400097679" chrStart: 10209984512 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38949 "PGSC0003DMT400097680" chrStart: 10210246656 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38950 "PGSC0003DMT400097681" chrStart: 10210508800 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38951 "PGSC0003DMT400097682" chrStart: 10210770944 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38952 "PGSC0003DMT400097683" chrStart: 10211033088 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38953 "PGSC0003DMT400097685" chrStart: 10211295232 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38954 "PGSC0003DMT400097686" chrStart: 10211557376 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38955 "PGSC0003DMT400097687" chrStart: 10211819520 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38956 "PGSC0003DMT400097688" chrStart: 10212081664 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38957 "PGSC0003DMT400097689" chrStart: 10212343808 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38958 "PGSC0003DMT400097692" chrStart: 10212605952 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38959 "PGSC0003DMT400097693" chrStart: 10212868096 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38960 "PGSC0003DMT400097694" chrStart: 10213130240 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38961 "PGSC0003DMT400097695" chrStart: 10213392384 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38962 "PGSC0003DMT400097696" chrStart: 10213654528 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38963 "PGSC0003DMT400097697" chrStart: 10213916672 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38964 "PGSC0003DMT400097698" chrStart: 10214178816 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38965 "PGSC0003DMT400097699" chrStart: 10214440960 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38966 "PGSC0003DMT400097700" chrStart: 10214703104 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38967 "PGSC0003DMT400097701" chrStart: 10214965248 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38968 "PGSC0003DMT400097702" chrStart: 10215227392 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38969 "PGSC0003DMT400097703" chrStart: 10215489536 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38970 "PGSC0003DMT400097704" chrStart: 10215751680 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38971 "PGSC0003DMT400097705" chrStart: 10216013824 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38972 "PGSC0003DMT400097706" chrStart: 10216275968 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38973 "PGSC0003DMT400097708" chrStart: 10216538112 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38974 "PGSC0003DMT400097709" chrStart: 10216800256 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38975 "PGSC0003DMT400097710" chrStart: 10217062400 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38976 "PGSC0003DMT400097711" chrStart: 10217324544 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38977 "PGSC0003DMT400097712" chrStart: 10217586688 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38978 "PGSC0003DMT400097713" chrStart: 10217848832 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38979 "PGSC0003DMT400097714" chrStart: 10218110976 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38980 "PGSC0003DMT400097715" chrStart: 10218373120 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38981 "PGSC0003DMT400097716" chrStart: 10218635264 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38982 "PGSC0003DMT400097717" chrStart: 10218897408 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38983 "PGSC0003DMT400097718" chrStart: 10219159552 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38984 "PGSC0003DMT400097719" chrStart: 10219421696 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38985 "PGSC0003DMT400097720" chrStart: 10219683840 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38986 "PGSC0003DMT400097721" chrStart: 10219945984 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38987 "PGSC0003DMT400097723" chrStart: 10220208128 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38988 "PGSC0003DMT400097724" chrStart: 10220470272 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38989 "PGSC0003DMT400097725" chrStart: 10220732416 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38990 "PGSC0003DMT400097726" chrStart: 10220994560 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38991 "PGSC0003DMT400097727" chrStart: 10221256704 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38992 "PGSC0003DMT400097728" chrStart: 10221518848 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38993 "PGSC0003DMT400097729" chrStart: 10221780992 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38994 "PGSC0003DMT400097730" chrStart: 10222043136 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38995 "PGSC0003DMT400097731" chrStart: 10222305280 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38996 "PGSC0003DMT400097732" chrStart: 10222567424 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38997 "PGSC0003DMT400097733" chrStart: 10222829568 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38998 "PGSC0003DMT400097734" chrStart: 10223091712 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 38999 "PGSC0003DMT400097735" chrStart: 10223353856 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39000 "PGSC0003DMT400097736" chrStart: 10223616000 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39001 "PGSC0003DMT400097737" chrStart: 10223878144 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39002 "PGSC0003DMT400097739" chrStart: 10224140288 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39003 "PGSC0003DMT400097740" chrStart: 10224402432 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39004 "PGSC0003DMT400097741" chrStart: 10224664576 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39005 "PGSC0003DMT400097743" chrStart: 10224926720 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39006 "PGSC0003DMT400097746" chrStart: 10225188864 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39007 "PGSC0003DMT400097749" chrStart: 10225451008 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39008 "PGSC0003DMT400097750" chrStart: 10225713152 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39009 "PGSC0003DMT400097752" chrStart: 10225975296 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39010 "PGSC0003DMT400097754" chrStart: 10226237440 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39011 "PGSC0003DMT400097756" chrStart: 10226499584 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39012 "PGSC0003DMT400097757" chrStart: 10226761728 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39013 "PGSC0003DMT400097758" chrStart: 10227023872 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39014 "PGSC0003DMT400097759" chrStart: 10227286016 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39015 "PGSC0003DMT400097760" chrStart: 10227548160 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39016 "PGSC0003DMT400097761" chrStart: 10227810304 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39017 "PGSC0003DMT400097762" chrStart: 10228072448 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39018 "PGSC0003DMT400097763" chrStart: 10228334592 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39019 "PGSC0003DMT400097764" chrStart: 10228596736 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39020 "PGSC0003DMT400097765" chrStart: 10228858880 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39021 "PGSC0003DMT400097766" chrStart: 10229121024 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39022 "PGSC0003DMT400097768" chrStart: 10229383168 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39023 "PGSC0003DMT400097769" chrStart: 10229645312 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39024 "PGSC0003DMT400097770" chrStart: 10229907456 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39025 "PGSC0003DMT400097771" chrStart: 10230169600 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39026 "PGSC0003DMT400097772" chrStart: 10230431744 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39027 "PGSC0003DMT400097774" chrStart: 10230693888 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39028 "PGSC0003DMT400097775" chrStart: 10230956032 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39029 "PGSC0003DMT400097777" chrStart: 10231218176 ../input/PGSC_DM_v3.4_transcript-update_representative.fasta : chr # 39030 "PGSC0003DMT400097780" chrStart: 10231480320 Estimated genome size=10432742464 10231742464 201000000 GstrandBit=34 Number of SA indices: 100073690 Feb 05 12:13:04 ... starting to sort Suffix Array. This may take a long time... Number of chunks: 32; chunks size limit: 27606528 bytes Feb 05 12:13:29 ... sorting Suffix Array chunks and saving them to disk... Writing 25989064 bytes into ../intermediate/PGSC//SA_19 ; empty space on disk = 803187658752 bytes ... done Writing 21646720 bytes into ../intermediate/PGSC//SA_23 ; empty space on disk = 803161669632 bytes ... done Writing 25635480 bytes into ../intermediate/PGSC//SA_0 ; empty space on disk = 803140022272 bytes ... done Writing 26587600 bytes into ../intermediate/PGSC//SA_6 ; empty space on disk = 803114385408 bytes ... done Writing 26832680 bytes into ../intermediate/PGSC//SA_16 ; empty space on disk = 803087794176 bytes ... done Writing 24187784 bytes into ../intermediate/PGSC//SA_1 ; empty space on disk = 803060961280 bytes ... done Writing 27004912 bytes into ../intermediate/PGSC//SA_4 ; empty space on disk = 803036770304 bytes ... done Writing 25390304 bytes into ../intermediate/PGSC//SA_28 ; empty space on disk = 803009765376 bytes ... done Writing 25848736 bytes into ../intermediate/PGSC//SA_22 ; empty space on disk = 802984374272 bytes ... done Writing 24753928 bytes into ../intermediate/PGSC//SA_15 ; empty space on disk = 802958524416 bytes ... done Writing 26685936 bytes into ../intermediate/PGSC//SA_24 ; empty space on disk = 802933768192 bytes ... done Writing 22333224 bytes into ../intermediate/PGSC//SA_2 ; empty space on disk = 802907078656 bytes ... done Writing 26509792 bytes into ../intermediate/PGSC//SA_14 ; empty space on disk = 802884743168 bytes ... done Writing 27172240 bytes into ../intermediate/PGSC//SA_25 ; empty space on disk = 802858229760 bytes ... done Writing 22632432 bytes into ../intermediate/PGSC//SA_7 ; empty space on disk = 802831056896 bytes ... done Writing 26475640 bytes into ../intermediate/PGSC//SA_17 ; empty space on disk = 802808422400 bytes ... done Writing 24927872 bytes into ../intermediate/PGSC//SA_8 ; empty space on disk = 802781945856 bytes ...Writing 27390384 bytes into ../intermediate/PGSC//SA_27 ; empty space on disk = 802768883712 bytes ... done done Writing 27555184 bytes into ../intermediate/PGSC//SA_29 ; empty space on disk = 802729623552 bytes ... done Writing 26094440 bytes into ../intermediate/PGSC//SA_11 ; empty space on disk = 802702065664 bytes ... done Writing 25726448 bytes into ../intermediate/PGSC//SA_5 ; empty space on disk = 802675970048 bytes ...Writing 26144688 bytes into ../intermediate/PGSC//SA_20 ; empty space on disk = 802674311168 bytes ... done done Writing 26640040 bytes into ../intermediate/PGSC//SA_12 ; empty space on disk = 802624094208 bytes ... done Writing 24158728 bytes into ../intermediate/PGSC//SA_21 ; empty space on disk = 802597453824 bytes ... done Writing 23192648 bytes into ../intermediate/PGSC//SA_9 ; empty space on disk = 802573291520 bytes ... done Writing 25355296 bytes into ../intermediate/PGSC//SA_26 ; empty space on disk = 802550095872 bytes ... done Writing 26087824 bytes into ../intermediate/PGSC//SA_10 ; empty space on disk = 802524737536 bytes ...Writing 25916208 bytes into ../intermediate/PGSC//SA_18 ; empty space on disk = 802504179712 bytes ... done done Writing 27162984 bytes into ../intermediate/PGSC//SA_13 ; empty space on disk = 802472726528 bytes ... done Writing 27061384 bytes into ../intermediate/PGSC//SA_3 ; empty space on disk = 802445561856 bytes ... done Writing 8781248 bytes into ../intermediate/PGSC//SA_31 ; empty space on disk = 802418499584 bytes ... done Writing 22707672 bytes into ../intermediate/PGSC//SA_30 ; empty space on disk = 802409717760 bytes ... done Feb 05 12:14:38 ... loading chunks from disk, packing SA... Feb 05 12:14:59 ... finished generating suffix array Feb 05 12:14:59 ... generating Suffix Array index Feb 05 12:15:23 ... completed Suffix Array index Feb 05 12:15:23 ... writing Genome to disk ... Writing 10231742464 bytes into ../intermediate/PGSC//Genome ; empty space on disk = 803187650560 bytes ... done SA size in bytes: 437822397 Feb 05 12:15:31 ... writing Suffix Array to disk ... Writing 437822397 bytes into ../intermediate/PGSC//SA ; empty space on disk = 792955908096 bytes ... done Feb 05 12:15:32 ... writing SAindex to disk Writing 8 bytes into ../intermediate/PGSC//SAindex ; empty space on disk = 792518082560 bytes ... done Writing 120 bytes into ../intermediate/PGSC//SAindex ; empty space on disk = 792518082560 bytes ... done Writing 1655351975 bytes into ../intermediate/PGSC//SAindex ; empty space on disk = 792518082560 bytes ... done Feb 05 12:15:33 ..... finished successfully DONE: Genome generation, EXITING
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Created: 22nd Mar 2020 at 23:04
Last updated: 22nd Mar 2020 at 23:04
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Version 1 (earliest) Created 22nd Mar 2020 at 23:04 by Andrej Blejec
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https://orcid.org/0000-0001-7484-6031
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, INDIE - Biotechnological production of sustainable indole, _p_stRT, Public project, Playground, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture
Institutions: National Institute of Biology, NewHorizon
https://orcid.org/0000-0001-7484-6031
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National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
Advanced Projects list for this Data file with search and filtering
project: _p_stRT Short Name: stRT Title: Solanum tuberosum Reference Transcriptomes Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato pISA projects path: ../pISA-Projects Local pISA-tree organisation: National Institute of Biology pISA project creation date: 2019-10-22 pISA project creator: Maja Zagorscak, Ziva Ramsak, Marko Petek Project funding code: This project was supported by the Slovenian Research Agency (grants P4-0165, J4-4165, J4-7636, ...
Programme: NIBSys
Public web page: http://www.nib.si/eng/index.php/systems-biology
Start date: 1st Dec 2017
End date: 1st Jan 2020
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Investigation: _I_STRT Short Name: STRT Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak, Ziva Ramsak, Marko Petek Principal investigator: Kristina Gruden License: MIT Sharing permission: Public Upload to FAIRDOMHub: Yes
RELATED ...
Submitter: Maja Zagorscak
Studies: SupplementaryInformation, _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: Supplementary Information, _A_01_GC_content-count, _A_01_evigene, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_cdhit_3cvs-GFFmerged, _A_03.1_filtering, _A_03.2_components, _A_03_components_3cvs-GFFmerged, _A_04_BUSCO_3cvs-GFFmerged, _A_04_TransRate, _A_05_BUSCO, _A_05_MSA_3cvs-GFFmerged, _A_06_tr_rep-transrate, _A_07_Desiree-mapping, _A_08_centrifuge_3cvs-GFFmerged, _A_09_annotation-GFFmerged
Advanced Studies list for this Data file with search and filtering
Short Name: 04_stPanTr Title: Solanum tuberosum Pan-Transcriptome Description: Solanum tuberosum Pan-Transcriptome Raw Data: pISA Study creation date: 2019-10-22 pISA Study creator: Maja Zagorscak Principal investigator: Kristina Gruden License: CC BY 4.0 Sharing permission: Public Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_STRT
Assays: _A_01_GC_content-count, _A_02_cdhit_3cvs-GFFmerged, _A_03_components_3cvs-GFFmerged, _A_04_BUSCO_3cvs-GFFmerged, _A_05_MSA_3cvs-GFFmerged, _A_06_tr_rep-transrate, _A_07_Desiree-mapping, _A_08_centrifuge_3cvs-GFFmerged, _A_09_annotation-GFFmerged
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Short Name: 07_Desiree-mapping Assay Class: DRY Assay Type: mapping Title: Desiree mapping Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT
Study: _S_04_stPanTr
