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Information for RNA and protein samples and cultures they were derived from.
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Created: 15th Apr 2019 at 10:12
Last updated: 17th Apr 2019 at 17:49
Last used: 17th Apr 2021 at 14:07

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Related items
Projects: SysMetEx
Institutions: University of Luxembourg
Biomining is a biotechnological process carried out in many parts of the world that exploits acid loving microorganisms to extract metals from sulphide minerals. One industrial biomining method is called ‘heap bioleaching’ where typically copper containing minerals are piled into very large heaps, acid and microorganisms are added to the top and the soluble metal is collected at the heap base.
The role of the different types of microbes in the process is to speed up metal solubilisation by oxidising
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Programme: ERASysAPP
Public web page: http://sysmetex.eu/index.html
Supplementary files for the submission:
Reverse Engineering Directed Gene Regulatory Networks from
Transcriptomics and Proteomics Data of Biomining Bacterial
Communities with Approximate Bayesian Computation and
Steady-State Signalling Simulations
Snapshots: Snapshot 1
Studies: Supplementary files
Assays: Proteome data, RNA data, Simulations for network engineering
Proteomics and transcriptomics data tables, sample IDs and description, source code
Person responsible: Malte Herold
Snapshots: No snapshots
Investigation: Reverse Engineering Directed Gene Regulatory Ne...
Assays: Proteome data, RNA data, Simulations for network engineering
Data derived from RNAseq
Submitter: Malte Herold
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Reverse Engineering Directed Gene Regulatory Ne...
Study: Supplementary files
Organisms: No organisms
SOPs: No SOPs
Data files: Sample information, TPM counts
Data derived from protein samples
Submitter: Malte Herold
Assay type: Experimental Assay Type
Technology type: Technology Type
Snapshots: No snapshots
Investigation: Reverse Engineering Directed Gene Regulatory Ne...
Study: Supplementary files
Organisms: No organisms
SOPs: No SOPs
Data files: LFQ intensities, Sample information