Assays

4 Assays visible to you, out of a total of 5

Simulating clock gene expression with model P2011.1.2

Comparison of simulated wild-type and prr7prr9 double mutant under 12L:12D cycles. Simulation with CVODE simulator via SBSI v1.5 framework.

Submitter: Andrew Millar

Biological problem addressed: Model Analysis Type

Investigation: Prediction and analysis of phenotypes in the Ar...

Study: Construction of Framework Model version 2 (FMv2)

Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : prr7-3 prr9-1 (T-DNA insertion PRR9;T-DNA insertion PRR7 / 28h circadian rhythm)

Models: Arabidopsis clock model P2011.1.2, P2011.1.2_directupload

SOPs: No SOPs

Data files: P2011.1.2 simulations and data in prr7 prr9 mut..., P2011.1.2 simulations of clock genes under LD c..., P2011.1.2 simulations vs. data for WT, normalis..., TiMet WP1.1 qRT-PCR LD to LL and DD

Snapshots: No snapshots

Created: 1st Feb 2017 at 21:29, Last updated: 15th Apr 2022 at 10:35

TiMet WP1.1a Metabolite analysis of clock mutants

Millar group, TiMet

Metabolite analysis in clock mutants: Col-0 parent and mutants gi-201, toc1-101 and prr7prr9; WS parent and lhy/cca1 double mutant. Plants grown in Golm and harvested at End of Day and End of Night, , assays 22 major metabolites. More detail on TiMet wiki if required. Heteroscedastic t-tests to highlight most significant changes, without multiple-testing correction.

Submitter: Andrew Millar

Assay type: Metabolite Concentration

Technology type: Chromatography

Investigation: Prediction and analysis of phenotypes in the Ar...

Study: Construction of Framework Model version 2 (FMv2)

Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : prr7-3 prr9-1 (T-DNA insertion PRR9;T-DNA insertion PRR7 / 28h circadian rhythm), Arabidopsis thaliana

SOPs: No SOPs

Data files: TiMet WP1.1a metabolite data, ED-EN in clock mu...

Snapshots: No snapshots

Created: 1st Feb 2017 at 20:29, Last updated: 15th Apr 2022 at 10:35

TiMet WP1.1, Clock gene expression in clock mutants

Millar group, TiMet