Genomic variance of the 2019-nCoV coronavirus

Abstract:

There is a rising global concern for the recently emerged novel coronavirus (2019-nCoV). Full genomic sequences have been released by the worldwide scientific community in the last few weeks to understand the evolutionary origin and molecular characteristics of this virus. Taking advantage of all the genomic information currently available, we constructed a phylogenetic tree including also representatives of other coronaviridae, such as Bat coronavirus (BCoV) and severe acute respiratory syndrome. We confirm high sequence similarity (\textgreater99%) between all sequenced 2019-nCoVs genomes available, with the closest BCoV sequence sharing 96.2% sequence identity, confirming the notion of a zoonotic origin of 2019-nCoV. Despite the low heterogeneity of the 2019-nCoV genomes, we could identify at least two hypervariable genomic hotspots, one of which is responsible for a Serine/Leucine variation in the viral ORF8-encoded protein. Finally, we perform a full proteomic comparison with other coronaviridae, identifying key aminoacidic differences to be considered for antiviral strategies deriving from previous anti-coronavirus approaches.

SEEK ID: https://fairdomhub.org/publications/517

DOI: 10.1002/jmv.25700

Projects: COVID-19 Disease Map

Publication type: Journal

Journal: Journal of Medical Virology

Citation: J Med Virol 92(5):522-528

Date Published: 24th Feb 2020

URL: https://onlinelibrary.wiley.com/doi/abs/10.1002/jmv.25700

Registered Mode: imported from a bibtex file

Authors: Carmine Ceraolo, Federico M. Giorgi

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Citation
Ceraolo, C., & Giorgi, F. M. (2020). Genomic variance of the 2019‐nCoV coronavirus. In Journal of Medical Virology (Vol. 92, Issue 5, pp. 522–528). Wiley. https://doi.org/10.1002/jmv.25700
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Created: 8th Apr 2020 at 20:13

Last updated: 8th Dec 2022 at 17:26

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