Studies
What is a Study?
Conversion from KEGG Reactome Information to SBTOOLBOX2 format.
Submitter: Sebastian Curth
Investigation: Modular Model Building
Assays: Example for model derivation from KEGG, Integration of data into the model
Submitter: Daniel Hönicke
Investigation: Altering the expression pattern in Clostridium ...
Assays: Transcriptional analyses of a thioredoxin (trxB, encoded by CAC1548) kno...
Annotation retrieval
Creation of the KEGG based Reactome
Submitter: Sebastian Curth
Investigation: Modular Model Building
Assays: Graph Analysis, KEGG Data Mining
Submitter: Sebastian Curth
Investigation: General Method Development
Assays: Theoretical calculation of quenching time and quenching temperature
We developed a new metabolomics protocol, which involved a comparison of different harvesting techniques, quenching solutions and extraction methods.
Submitter: John Raedts
Investigation: Identification of regulatory metabolites in the...
Submitter: Holger Janssen
Investigation: The effect of pH upon the metabolic shift in Cl...
Assays: Comparison of the proteome between pH 5.7 (acidogenesis) and pH 4.5 (sol...
Submitter: Holger Janssen
Investigation: The effect of pH upon the metabolic shift in Cl...
Assays: Study of the end products of the acidogenesis and solventogenesis pathways
Mathematical modelling of the dynamic shift experiments and the effect of pH upon gene regulation.
Provided with genomic data over different pH values we have the opportunity to study the similarity of gene expression profiles and cluster groups of very simlar gene expression profiles. Via PCA we can furthermore study dynamic similarity and compe genes that are possible co-regulators or anti-regulators in the clostridial metabolism.
Submitter: Sebastian Curth
Investigation: The effect of pH upon the metabolic shift in Cl...
Assays: Identification of dynamically similar transcript profiles
test test
Submitter: Holger Janssen
Investigation: Systems Biology of Clostridium acetobutylicum -...
Assays: test
