Documents

CCA1 genomic fusion with LUC+ for comparision between NanoLUC and Firfly luciferase

https://benchling.com/s/ctB45lUQ?m=slm-ZYj5TlnFsbJeTkd2f9Aa

This scaling factors can be pluged into U2020.4. They were derived by numerically matching the synthetic protein data

Listing of parameter values, identical to Supplementary Table 2 of the preprint and publication.

This file contains the dependencies required for running SloppyCell and Tellurium together using Jupyter notebooks. It can be used to create a Docker image by executing the command

docker build user/image:version .

The image used for the project can be pulled from Docker hub by typing

docker pull uurquiza/urquiza2019a_tellurium_sloppycell:latest

Contains the summary of model evolution for the Arabidopsis clock in absolute units. In these process two alternative architectures were proposed and fitted to Flis A et al 2015 Open Biology.

What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling; Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.

The original PlaSMo project description is included within the attached document.

Our aims

To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost To represent these models in a declarative XML-based ...