Assays

4 Assays visible to you, out of a total of 8

Chemical defensome genes for five fish species

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Build the chemical defensome gene list for 5 fish: Zebrafish (Danio rerio), Atlantic cod (Gadus morhua), medaka (Oryzias latipes), Atlantic killifish (Fundulus heteroclitus) and stickleback (Gasterosteus aculeatus). Source code and relevant files can be found on GitHub: https://github.com/zhxiaokang/fishDefensome/tree/main/defensomeGenes

Submitter: Xiaokang Zhang

Biological problem addressed: Stress response/Adaptation

Investigation: 1 hidden item

Study: The chemical defensome of fish

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Chemical defensome genes overview for five fish, Chemical defensome relevant Pfam accession list, Gene pattern to filter defensome relevant genes

Snapshots: No snapshots

Created: 16th Dec 2020 at 20:16, Last updated: 20th Apr 2021 at 12:50

Expression of defensome genes in early development of fish

Systems toxicology of Atlantic cod

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To study the defensome genes' expression in early developmental stages of zebrafish and stickleback. Souce code and relevant files can be found on GitHub: https://github.com/zhxiaokang/fishDefensome/tree/main/developmentalStages

Submitter: Xiaokang Zhang

Biological problem addressed: Stress response/Adaptation

Investigation: 1 hidden item

Study: The chemical defensome of fish

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Defensome gene expression in early develepmenta..., Defensome gene expression in early develepmenta..., Gene lists for clusters in developmental stages..., Gene lists for clusters in developmental stages...

Snapshots: Snapshot 1, Snapshot 2

DOI: 10.15490/fairdomhub.1.assay.1379.2

Created: 16th Dec 2020 at 21:42, Last updated: 17th Apr 2021 at 16:59

Exposure response of defensome genes

Systems toxicology of Atlantic cod

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Exposing zebrafish to benzo(a)pyrene (B(a)P) (gene counts from NCBI GEO: GSE64198, previously published by Fang, et al. 2015. Souce code and relevant files can be found on GitHub: https://github.com/zhxiaokang/fishDefensome/tree/main/exposureResponse

Submitter: Xiaokang Zhang

Biological problem addressed: Stress response/Adaptation

Investigation: 1 hidden item

Study: The chemical defensome of fish

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Exposure response on defensome genes in zebrafi...

Snapshots: No snapshots

Created: 16th Dec 2020 at 22:26, Last updated: 16th Dec 2020 at 22:34

Draft metabolic reconstruction model of Atlantic cod liver

Systems toxicology of Atlantic cod