Assays

2 Assays visible to you, out of a total of 2

Simulating clock gene expression with model P2011.1.2

Comparison of simulated wild-type and prr7prr9 double mutant under 12L:12D cycles. Simulation with CVODE simulator via SBSI v1.5 framework.

Submitter: Andrew Millar

Biological problem addressed: Model Analysis Type

Investigation: Prediction and analysis of phenotypes in the Ar...

Study: Construction of Framework Model version 2 (FMv2)

Organisms: Arabidopsis thaliana : Col-0 wild type (wild-type / wild-type), Arabidopsis thaliana : prr7-3 prr9-1 (T-DNA insertion PRR9;T-DNA insertion PRR7 / 28h circadian rhythm)

Models: Arabidopsis clock model P2011.1.2, P2011.1.2_directupload

SOPs: No SOPs

Data files: P2011.1.2 simulations and data in prr7 prr9 mut..., P2011.1.2 simulations of clock genes under LD c..., P2011.1.2 simulations vs. data for WT, normalis..., TiMet WP1.1 qRT-PCR LD to LL and DD

Snapshots: No snapshots

Created: 1st Feb 2017 at 21:29, Last updated: 15th Apr 2022 at 10:35

TiMet RNA timeseries data and starting models

Millar group

RNA timeseries data for Arabidopsis Col wild-type plants and clock mutants, as separate mean and SD files. The raw data is available on BioDare.ed.ac.uk, and is linked as 'Attribution' from elsewhere on FAIRDOMHub.

The starting models are included here in their original forms, the P2011 model as an SBML L3V1 model file, and the KF2014 model of Fogelmark et al. shared as SBML; both prepared by Uriel Urquiza.

Submitter: Andrew Millar

Biological problem addressed: Gene Regulatory Network

Investigation: Absolute units in Arabidopsis clock models up t...

Study: Rescaling the P2011 model to match RNA data

Organisms: No organisms

Models: Arabidopsis clock model P2011.1.2, F2014 all parameters in SBML, F2014.1 - PLM_1030, version 1, SUBMITTED, F2014.1.2 with stepfunction and 1 hidden item

SOPs: No SOPs

Data files: Processed TiMet WP1.1a RNA data, SD, Processed TiMet WP1.1a RNA data, mean

Snapshots: No snapshots

Created: 6th Dec 2017 at 21:48, Last updated: 2nd Aug 2021 at 21:48

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