Collection of experiments created by Munoz Felipe on the original BioDare and automatically transferred to FAIRDOM Hub.
SEEK ID: https://fairdomhub.org/investigations/802
Projects: BioDare1
Investigation position:
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Creators and SubmitterViews: 309
Created: 19th Jun 2026 at 09:08
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Projects: Millar group, BioDare1
Institutions: University of Edinburgh, School of Biological Sciences, University of Edinburgh
https://orcid.org/0000-0002-1352-7245
Expertise: Data Management, Python, R, Programming, microscopy, fluorescence protein fusions, Software Engineering
Tools: Data Management, Python, R, Fluorescence and confocal microscopy, Time-lapse fluorescence microscopy Flow cytometry, Fluorecence based reporter gene analyses/single cell analyses
Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Experimental data that were previously hosted on the original version of BioDare (biodare.ed.ac.uk), which opened in 2009, please see https://doi.org/10.1007/978-1-4939-0700-7_2. BioDare was designed as a repository of rhythmic biological data, especially for 24-hour circadian rhythms, with specialised analytical routines for period, phase and amplitude estimation on each data timeseries. Most rhythms tested were measured using gene expression, either directly as RNA levels, or indirectly using ...
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: https://biodare2.ed.ac.uk
Start date: 7th Jul 2006
End date: 21st Dec 2017
Organisms: Arabidopsis thaliana, Neurospora crassa
Unpublished
DOI: none
Submitter: Daniel Thedie
Investigation: Munoz Felipe
Assays: Analysis of Control Strains Neurospora crassa, Carbon Source, Controls, Entrainment Control Analysis
Snapshots: No snapshots
Controls
| Property | Value |
|---|---|
| BioDare ID | 1153 |
| Author | Felipe Munoz |
| Institution | Pontificia Universidad Católica de Chile |
| License | CC_BY |
Description
Purpose
Global Search
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Munoz Felipe
Study: Unpublished
Organisms: Neurospora crassa
SOPs: No SOPs
Data files: BioDare_metadata.json, Controles.xlsx, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 276.csv, Statistics 277.csv, Statistics 278.csv, Statistics 279.csv, Statistics 280.csv, Statistics 281.csv, Statistics 282.csv, Statistics 283.csv, Statistics 284.csv, Statistics 285.csv, Statistics 286.csv, Statistics 287.csv, Statistics 288.csv, Statistics 289.csv, Statistics 290.csv, Statistics 291.csv, Statistics 292.csv, Statistics 293.csv, Statistics 294.csv, Statistics 295.csv
Snapshots: No snapshots
Entrainment Control Analysis
| Property | Value |
|---|---|
| BioDare ID | 1178 |
| Author | Felipe Munoz |
| Institution | Pontificia Universidad Católica de Chile |
| License | CC_BY |
Description
Purpose
Compare Period Calculations using entrainment and non entrainment strains for 72 hours
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Munoz Felipe
Study: Unpublished
Organisms: Neurospora crassa
SOPs: No SOPs
Data files: BioDare_metadata.json, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 334.csv, Statistics 335.csv, Statistics 336.csv, Statistics 337.csv, Statistics 338.csv, Statistics 339.csv, Statistics 426.csv, Statistics 427.csv, Statistics 429.csv, Statistics 430.csv, Statistics 431.csv, entrenamiento o no.xlsx
Snapshots: No snapshots
Carbon Source
| Property | Value |
|---|---|
| BioDare ID | 1181 |
| Author | Felipe Munoz |
| Institution | Pontificia Universidad Católica de Chile |
| License | CC_BY |
Description
Purpose
Compare Control Strains in different Carbon Sources
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Munoz Felipe
Study: Unpublished
Organisms: Neurospora crassa
SOPs: No SOPs
Data files: BioDare_metadata.json, CarbonSources.xlsx, Individual results.csv, Readme.md, STANDARD_DATAFILE.txt, STANDARD_RAWDATAFILE.txt, Sample_list.csv, Statistics 342.csv, Statistics 343.csv, Statistics 344.csv, Statistics 345.csv, Statistics 346.csv, Statistics 347.csv, Statistics 348.csv, Statistics 349.csv, Statistics 350.csv, Statistics 351.csv, Statistics 353.csv, Statistics 354.csv, Statistics 355.csv, Statistics 356.csv, Statistics 357.csv, Statistics 358.csv, Statistics 359.csv, Statistics 360.csv, Statistics 361.csv, Statistics 362.csv, Statistics 420.csv, Statistics 421.csv, Statistics 422.csv, Statistics 423.csv, Statistics 424.csv, Statistics 425.csv
Snapshots: No snapshots
Analysis of Control Strains Neurospora crassa
| Property | Value |
|---|---|
| BioDare ID | 13945617808900 |
| Author | Felipe Munoz |
| Institution | Pontificia Universidad Católica de Chile |
| License | CC_BY |
Description
Purpose
Compare different siblings of the parental/control strains in the global screening of transcription factors capable to affect the circadian oscilator
Comments
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Munoz Felipe
Study: Unpublished
Organisms: Neurospora crassa
SOPs: No SOPs
Data files: BioDare_metadata.json, Controls.3.xlsx, Individual results.csv, Readme.md, STANDARD_DATAFILE.3.txt, STANDARD_RAWDATAFILE.3.txt, Sample_list.csv, Statistics 2116.csv, Statistics 2117.csv, Statistics 2118.csv, Statistics 2119.csv, Statistics 2120.csv, Statistics 2121.csv, Statistics 2122.csv, Statistics 2123.csv, Statistics 2124.csv, Statistics 2125.csv, Statistics 2126.csv
Snapshots: No snapshots
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
Investigations: Munoz Felipe
Studies: Unpublished
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
File exported from BioDare Period Phase Analysis (PPA)
Creator: Felipe Munoz
Submitter: Daniel Thedie
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