reports/spades_errorcor.log Version 1
_p_SUSPHIRE/_I_T31_mealybug/_S_P4_Pcitri_tr2/_A_01_assembly2-rnaSPAdes/
SEEK ID: https://fairdomhub.org/documents/3886?version=1
Filename:
reports/spades_errorcor.log
Format: Plain text document
Size: 93.4 KB
Command line: /home/administrator/Software/SPAdes-3.13.1-Linux/bin/spades.py --only-error-correction -m 230 -t 32 -o /DATA/markop/Pcitri_rnaspades_alldata/input --pe1-fr --pe2-fr --pe3-fr --pe1-12 /DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq --pe2-12 /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq --pe3-12 /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq
System information:
SPAdes version: 3.13.1
Python version: 2.7.12
OS: Linux-4.13.0-41-generic-x86_64-with-LinuxMint-18.2-sonya
Output dir: /DATA/markop/Pcitri_rnaspades_alldata/input
Mode: ONLY read error correction (without assembling)
Debug mode is turned OFF
Dataset parameters:
Multi-cell mode (you should set '--sc' flag if input data was obtained with MDA (single-cell) technology or --meta flag if processing metagenomic dataset)
Reads:
Library number: 1, library type: paired-end
orientation: fr
left reads: not specified
right reads: not specified
interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq']
single reads: not specified
merged reads: not specified
Library number: 2, library type: paired-end
orientation: fr
left reads: not specified
right reads: not specified
interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq']
single reads: not specified
merged reads: not specified
Library number: 3, library type: paired-end
orientation: fr
left reads: not specified
right reads: not specified
interlaced reads: ['/DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq']
single reads: not specified
merged reads: not specified
Read error correction parameters:
Iterations: 1
PHRED offset will be auto-detected
Corrected reads will be compressed
Other parameters:
Dir for temp files: /DATA/markop/Pcitri_rnaspades_alldata/input/tmp
Threads: 32
Memory limit (in Gb): 230
======= SPAdes pipeline started. Log can be found here: /DATA/markop/Pcitri_rnaspades_alldata/input/spades.log
== Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/SUSPHIRE_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory)
== Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh50_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory)
== Splitting /DATA/markop/Pcitri_rnaspades_alldata/input/Edinburgh75_filtered.fastq into left and right reads (in /DATA/markop/Pcitri_rnaspades_alldata/input/split_input directory)
===== Read error correction started.
== Running read error correction tool: /home/administrator/Software/SPAdes-3.13.1-Linux/bin/spades-hammer /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/configs/config.info
0:00:00.000 4M / 4M INFO General (main.cpp : 75) Starting BayesHammer, built from refs/heads/spades_3.13.1, git revision 9a9d54db2ff9abaac718155bf74c12ec9464e8ca
0:00:00.000 4M / 4M INFO General (main.cpp : 76) Loading config from /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/configs/config.info
0:00:00.002 4M / 4M INFO General (main.cpp : 78) Maximum # of threads to use (adjusted due to OMP capabilities): 32
0:00:00.002 4M / 4M INFO General (memory_limit.cpp : 49) Memory limit set to 230 Gb
0:00:00.002 4M / 4M INFO General (main.cpp : 86) Trying to determine PHRED offset
0:00:00.011 4M / 4M INFO General (main.cpp : 92) Determined value is 33
0:00:00.011 4M / 4M INFO General (hammer_tools.cpp : 36) Hamming graph threshold tau=1, k=21, subkmer positions = [ 0 10 ]
0:00:00.011 4M / 4M INFO General (main.cpp : 113) Size of aux. kmer data 24 bytes
=== ITERATION 0 begins ===
0:00:00.012 4M / 4M INFO K-mer Index Building (kmer_index_builder.hpp : 301) Building kmer index
0:00:00.012 4M / 4M INFO General (kmer_index_builder.hpp : 117) Splitting kmer instances into 512 files using 32 threads. This might take a while.
0:00:00.013 4M / 4M INFO General (file_limit.hpp : 32) Open file limit set to 10000
0:00:00.013 4M / 4M INFO General (kmer_splitters.hpp : 89) Memory available for splitting buffers: 2.39579 Gb
0:00:00.013 4M / 4M INFO General (kmer_splitters.hpp : 97) Using cell size of 131072
0:00:00.122 17G / 17G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq
0:00:59.637 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 7551826 reads
0:01:57.064 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 15099419 reads
0:02:58.294 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 22632325 reads
0:03:58.434 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 30111488 reads
0:05:00.866 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 37626949 reads
0:06:04.349 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 45207512 reads
0:07:03.266 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 52764527 reads
0:08:04.166 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 60447827 reads
0:09:05.019 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 68064494 reads
0:10:06.500 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 75612315 reads
0:11:08.465 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 83161170 reads
0:12:09.625 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 90758682 reads
0:18:10.582 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 136365190 reads
0:36:45.438 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 275373560 reads
0:44:21.558 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq
1:11:44.448 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 537165579 reads
1:28:54.258 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq
1:40:06.249 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq
1:52:30.932 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq
2:01:45.259 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 107) Processed 1078169479 reads
2:10:02.224 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 97) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq
2:27:23.453 17G / 18G INFO K-mer Splitting (kmer_data.cpp : 112) Total 1375900260 reads processed
2:27:25.041 128M / 18G INFO General (kmer_index_builder.hpp : 120) Starting k-mer counting.
2:53:47.489 128M / 18G INFO General (kmer_index_builder.hpp : 127) K-mer counting done. There are 2665835484 kmers in total.
2:53:47.489 128M / 18G INFO General (kmer_index_builder.hpp : 133) Merging temporary buckets.
2:54:06.518 128M / 18G INFO K-mer Index Building (kmer_index_builder.hpp : 314) Building perfect hash indices
2:55:53.937 1G / 18G INFO General (kmer_index_builder.hpp : 150) Merging final buckets.
2:58:15.092 1G / 18G INFO K-mer Index Building (kmer_index_builder.hpp : 336) Index built. Total 1236163304 bytes occupied (3.70965 bits per kmer).
2:58:15.096 1G / 18G INFO K-mer Counting (kmer_data.cpp : 356) Arranging kmers in hash map order
3:00:14.669 41G / 41G INFO General (main.cpp : 148) Clustering Hamming graph.
4:01:51.554 41G / 41G INFO General (main.cpp : 155) Extracting clusters
4:46:10.114 41G / 97G INFO General (main.cpp : 167) Clustering done. Total clusters: 963678659
4:46:11.913 21G / 97G INFO K-mer Counting (kmer_data.cpp : 376) Collecting K-mer information, this takes a while.
4:46:45.852 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq
5:46:29.452 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq
6:43:49.562 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq
6:51:27.922 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq
6:58:38.802 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq
7:15:33.108 80G / 97G INFO K-mer Counting (kmer_data.cpp : 382) Processing /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq
7:32:09.314 80G / 97G INFO K-mer Counting (kmer_data.cpp : 389) Collection done, postprocessing.
7:32:21.272 80G / 97G INFO K-mer Counting (kmer_data.cpp : 403) There are 2665835484 kmers in total. Among them 1629294690 (61.1176%) are singletons.
7:32:21.272 80G / 97G INFO General (main.cpp : 173) Subclustering Hamming graph
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 649) Subclustering done. Total 105389 non-read kmers were generated.
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 650) Subclustering statistics:
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 651) Total singleton hamming clusters: 816331828. Among them 387596852 (47.4803%) are good
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 652) Total singleton subclusters: 11642560. Among them 11608386 (99.7065%) are good
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 653) Total non-singleton subcluster centers: 187925135. Among them 142141957 (75.6375%) are good
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 654) Average size of non-trivial subcluster: 9.84488 kmers
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 655) Average number of sub-clusters per non-singleton cluster: 1.35441
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 656) Total solid k-mers: 541347195
9:41:00.740 80G / 97G INFO Hamming Subclustering (kmer_cluster.cpp : 657) Substitution probabilities: [4,4]((0.910902,0.0286632,0.028672,0.031763),(0.0368107,0.908562,0.0195257,0.0351015),(0.0326911,0.0189579,0.909382,0.0389691),(0.0304214,0.0285475,0.0285302,0.912501))
9:41:01.902 80G / 97G INFO General (main.cpp : 178) Finished clustering.
9:41:01.908 80G / 97G INFO General (main.cpp : 197) Starting solid k-mers expansion in 32 threads.
11:17:59.406 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 0 produced 262811718 new k-mers.
12:54:22.502 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 1 produced 22818263 new k-mers.
14:31:21.390 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 2 produced 1694115 new k-mers.
16:07:14.730 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 3 produced 227983 new k-mers.
17:42:51.650 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 4 produced 46172 new k-mers.
19:19:05.346 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 5 produced 14599 new k-mers.
20:55:46.246 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 6 produced 4875 new k-mers.
22:31:40.518 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 7 produced 1774 new k-mers.
24:07:36.254 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 8 produced 604 new k-mers.
25:43:22.014 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 9 produced 304 new k-mers.
27:19:10.398 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 10 produced 69 new k-mers.
28:54:48.186 80G / 97G INFO General (main.cpp : 218) Solid k-mers iteration 11 produced 0 new k-mers.
28:54:48.187 80G / 97G INFO General (main.cpp : 222) Solid k-mers finalized
28:54:48.192 80G / 97G INFO General (hammer_tools.cpp : 220) Starting read correction in 32 threads.
28:54:48.192 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/SUSPHIRE_filtered_2.fastq
28:55:10.793 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads.
28:55:36.575 84G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0
28:55:42.569 84G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0
28:56:18.435 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads.
28:56:44.274 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1
28:56:50.497 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1
28:57:28.314 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads.
28:57:54.855 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2
28:58:01.125 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2
28:58:38.756 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads.
28:59:05.046 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3
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28:59:48.221 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads.
29:00:13.602 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4
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29:00:57.508 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads.
29:01:22.922 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5
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29:02:05.940 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads.
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29:03:16.627 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads.
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29:04:27.173 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads.
29:04:53.458 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8
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29:05:39.014 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads.
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29:06:51.540 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads.
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29:08:00.868 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads.
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29:09:10.536 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads.
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29:10:20.554 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads.
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29:11:30.390 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads.
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29:12:40.207 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads.
29:13:05.683 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15
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29:13:50.770 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads.
29:14:16.032 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16
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29:15:00.455 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads.
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29:16:10.469 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads.
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29:17:17.932 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads.
29:17:42.327 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19
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29:18:27.265 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads.
29:18:53.770 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20
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29:19:37.563 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads.
29:20:03.130 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21
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29:20:47.678 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads.
29:21:14.034 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22
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29:21:57.870 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads.
29:22:25.069 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23
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29:23:09.370 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads.
29:23:34.520 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24
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29:24:18.230 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads.
29:24:43.172 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25
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29:25:27.810 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads.
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29:26:39.022 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads.
29:27:04.675 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27
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29:27:48.412 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads.
29:28:13.243 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28
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29:28:57.766 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads.
29:29:22.226 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29
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29:30:06.280 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads.
29:30:31.194 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30
29:30:37.113 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30
29:31:16.460 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads.
29:31:42.743 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31
29:31:48.682 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31
29:32:26.710 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads.
29:32:52.021 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32
29:32:57.950 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32
29:33:37.421 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads.
29:34:02.719 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33
29:34:08.672 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33
29:34:46.662 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads.
29:35:11.878 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34
29:35:17.999 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34
29:35:57.628 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads.
29:36:22.571 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35
29:36:28.980 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35
29:37:07.207 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads.
29:37:34.022 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36
29:37:40.600 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36
29:38:20.724 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads.
29:38:45.843 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37
29:38:52.520 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37
29:39:30.826 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads.
29:39:57.297 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38
29:40:04.057 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38
29:40:45.119 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads.
29:41:12.089 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39
29:41:19.186 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39
29:41:57.440 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads.
29:42:22.120 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40
29:42:28.234 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40
29:43:08.355 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads.
29:43:33.292 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41
29:43:39.247 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41
29:44:17.070 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads.
29:44:43.065 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42
29:44:49.017 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42
29:45:29.083 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads.
29:45:55.375 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43
29:46:01.334 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43
29:46:40.190 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads.
29:47:04.678 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44
29:47:10.721 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44
29:47:51.399 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads.
29:48:16.553 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45
29:48:22.623 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45
29:49:01.598 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads.
29:49:27.263 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46
29:49:33.366 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46
29:50:13.417 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads.
29:50:38.026 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47
29:50:44.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47
29:51:23.777 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 3200000 reads.
29:51:48.387 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48
29:51:55.434 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48
29:52:35.357 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 49 of 3200000 reads.
29:53:00.543 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 49
29:53:06.521 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 49
29:53:44.876 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 50 of 3200000 reads.
29:54:10.807 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 50
29:54:16.754 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 50
29:54:56.784 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 51 of 3200000 reads.
29:55:23.341 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 51
29:55:29.388 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 51
29:56:10.072 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 52 of 3200000 reads.
29:56:37.273 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 52
29:56:43.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 52
29:57:23.380 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 53 of 3200000 reads.
29:57:48.311 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 53
29:57:54.283 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 53
29:58:34.985 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 54 of 3200000 reads.
29:59:00.495 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 54
29:59:06.457 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 54
29:59:47.184 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 55 of 3200000 reads.
30:00:12.946 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 55
30:00:19.127 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 55
30:00:58.322 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 56 of 3200000 reads.
30:01:23.691 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 56
30:01:29.870 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 56
30:02:10.271 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 57 of 3200000 reads.
30:02:35.634 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 57
30:02:42.315 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 57
30:03:21.159 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 58 of 3200000 reads.
30:03:47.426 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 58
30:03:54.682 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 58
30:04:33.644 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 59 of 3200000 reads.
30:04:58.799 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 59
30:05:04.794 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 59
30:05:44.837 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 60 of 3200000 reads.
30:06:10.099 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 60
30:06:16.001 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 60
30:06:54.842 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 61 of 3200000 reads.
30:07:20.389 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 61
30:07:26.289 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 61
30:08:06.726 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 62 of 3200000 reads.
30:08:32.933 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 62
30:08:38.991 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 62
30:09:18.468 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 63 of 3200000 reads.
30:09:45.490 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 63
30:09:51.512 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 63
30:10:32.413 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 64 of 3200000 reads.
30:11:00.105 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 64
30:11:06.184 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 64
30:11:44.054 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 65 of 3200000 reads.
30:12:09.803 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 65
30:12:15.940 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 65
30:12:57.247 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 66 of 3200000 reads.
30:13:24.485 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 66
30:13:30.847 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 66
30:14:09.024 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 67 of 3200000 reads.
30:14:35.593 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 67
30:14:42.045 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 67
30:15:23.103 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 68 of 3200000 reads.
30:15:48.614 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 68
30:15:55.504 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 68
30:16:34.213 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 69 of 3200000 reads.
30:17:00.654 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 69
30:17:07.849 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 69
30:17:49.140 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 70 of 3200000 reads.
30:18:15.525 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 70
30:18:21.601 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 70
30:18:59.805 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 71 of 3200000 reads.
30:19:25.915 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 71
30:19:31.870 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 71
30:20:12.699 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 72 of 3200000 reads.
30:20:38.467 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 72
30:20:44.439 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 72
30:21:23.950 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 73 of 3200000 reads.
30:21:51.502 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 73
30:21:57.469 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 73
30:22:37.851 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 74 of 3200000 reads.
30:23:04.371 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 74
30:23:10.419 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 74
30:23:50.619 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 75 of 3200000 reads.
30:24:18.413 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 75
30:24:24.595 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 75
30:25:05.442 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 76 of 3200000 reads.
30:25:30.686 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 76
30:25:37.306 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 76
30:26:17.642 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 77 of 3200000 reads.
30:26:44.438 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 77
30:26:51.331 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 77
30:27:32.426 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 78 of 3200000 reads.
30:27:58.684 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 78
30:28:05.925 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 78
30:28:46.153 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 79 of 3200000 reads.
30:29:11.885 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 79
30:29:17.927 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 79
30:29:59.083 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 80 of 3200000 reads.
30:30:25.125 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 80
30:30:31.317 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 80
30:31:12.327 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 81 of 3200000 reads.
30:31:39.592 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 81
30:31:45.736 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 81
30:32:26.763 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 82 of 3200000 reads.
30:32:52.350 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 82
30:32:58.319 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 82
30:33:39.755 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 83 of 3200000 reads.
30:34:05.778 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 83
30:34:11.758 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 83
30:34:52.431 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 84 of 3200000 reads.
30:35:19.278 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 84
30:35:25.423 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 84
30:36:05.566 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 85 of 3200000 reads.
30:36:32.644 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 85
30:36:38.795 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 85
30:37:20.660 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 86 of 3200000 reads.
30:37:46.912 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 86
30:37:53.119 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 86
30:38:33.211 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 87 of 3200000 reads.
30:39:00.862 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 87
30:39:07.198 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 87
30:39:48.978 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 88 of 3200000 reads.
30:40:14.197 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 88
30:40:20.912 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 88
30:41:01.565 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 89 of 3200000 reads.
30:41:27.921 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 89
30:41:35.276 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 89
30:42:18.065 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 90 of 3200000 reads.
30:42:45.540 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 90
30:42:51.767 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 90
30:43:31.632 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 91 of 3200000 reads.
30:43:57.436 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 91
30:44:03.479 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 91
30:44:45.188 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 92 of 3200000 reads.
30:45:11.105 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 92
30:45:17.024 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 92
30:45:57.143 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 93 of 3200000 reads.
30:46:23.520 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 93
30:46:29.560 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 93
30:47:10.308 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 94 of 3200000 reads.
30:47:36.767 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 94
30:47:42.841 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 94
30:48:23.384 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 95 of 3200000 reads.
30:48:49.022 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 95
30:48:55.257 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 95
30:49:36.209 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 96 of 3200000 reads.
30:50:02.168 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 96
30:50:08.417 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 96
30:50:48.793 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 97 of 3200000 reads.
30:51:15.002 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 97
30:51:21.586 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 97
30:52:03.229 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 98 of 3200000 reads.
30:52:29.672 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 98
30:52:36.871 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 98
30:53:17.670 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 99 of 3200000 reads.
30:53:44.521 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 99
30:53:51.432 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 99
30:54:33.130 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 100 of 3200000 reads.
30:55:01.026 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 100
30:55:07.431 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 100
30:55:46.316 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 101 of 3200000 reads.
30:56:11.942 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 101
30:56:17.888 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 101
30:56:57.976 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 102 of 3200000 reads.
30:57:25.071 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 102
30:57:31.063 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 102
30:58:07.248 85G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 103 of 2093405 reads.
30:58:25.665 85G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 103
30:58:29.554 85G / 97G INFO General (hammer_tools.cpp : 185) Written batch 103
30:58:32.596 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh50_filtered_2.fastq
30:58:55.574 82G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads.
30:59:02.054 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0
30:59:05.756 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0
30:59:19.788 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads.
30:59:26.454 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1
30:59:30.534 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1
30:59:50.103 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads.
30:59:56.669 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2
31:00:00.643 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2
31:00:10.730 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads.
31:00:17.324 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3
31:00:21.183 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 3
31:00:57.275 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads.
31:01:03.875 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4
31:01:07.823 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 4
31:01:18.393 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads.
31:01:24.702 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5
31:01:28.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 5
31:02:02.429 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads.
31:02:08.876 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 6
31:02:12.745 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 6
31:02:22.158 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads.
31:02:28.900 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 7
31:02:33.190 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 7
31:03:06.389 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads.
31:03:12.607 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8
31:03:16.426 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 8
31:03:26.268 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads.
31:03:32.521 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 9
31:03:36.497 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 9
31:04:10.088 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads.
31:04:16.664 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 10
31:04:21.233 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 10
31:04:30.839 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads.
31:04:37.164 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 11
31:04:41.142 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 11
31:05:10.331 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads.
31:05:16.789 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 12
31:05:20.637 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 12
31:05:30.234 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads.
31:05:37.122 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 13
31:05:41.094 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 13
31:06:12.333 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads.
31:06:18.754 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 14
31:06:22.603 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 14
31:06:32.063 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads.
31:06:38.484 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15
31:06:42.385 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 15
31:07:11.166 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads.
31:07:17.882 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16
31:07:21.718 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 16
31:07:31.584 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads.
31:07:37.982 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 17
31:07:42.206 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 17
31:08:14.556 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads.
31:08:20.856 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 18
31:08:24.665 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 18
31:08:34.348 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads.
31:08:40.730 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19
31:08:44.893 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 19
31:09:15.123 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads.
31:09:22.052 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20
31:09:26.027 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 20
31:09:35.740 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads.
31:09:42.101 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21
31:09:45.933 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 21
31:10:21.821 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads.
31:10:28.048 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22
31:10:31.849 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 22
31:10:42.922 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads.
31:10:49.488 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23
31:10:53.340 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 23
31:11:20.111 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads.
31:11:26.697 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24
31:11:30.526 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 24
31:11:40.559 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads.
31:11:47.137 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25
31:11:51.413 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 25
31:12:25.322 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads.
31:12:31.762 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 26
31:12:35.599 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 26
31:12:45.656 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads.
31:12:52.125 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27
31:12:55.987 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 27
31:13:25.983 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads.
31:13:32.662 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28
31:13:36.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 28
31:13:46.214 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads.
31:13:52.755 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29
31:13:56.679 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 29
31:14:32.473 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads.
31:14:39.135 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30
31:14:42.983 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30
31:14:53.792 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads.
31:15:00.428 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31
31:15:04.350 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31
31:15:27.518 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads.
31:15:34.236 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32
31:15:38.101 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32
31:15:47.681 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads.
31:15:54.106 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33
31:15:57.926 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33
31:16:33.590 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads.
31:16:40.170 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34
31:16:44.000 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34
31:16:54.864 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads.
31:17:01.297 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35
31:17:05.484 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35
31:17:30.147 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads.
31:17:36.637 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36
31:17:40.572 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36
31:17:50.269 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads.
31:17:56.742 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37
31:18:00.554 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37
31:18:38.338 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads.
31:18:44.653 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38
31:18:48.519 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38
31:18:57.909 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads.
31:19:04.779 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39
31:19:09.657 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39
31:19:38.772 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads.
31:19:45.205 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40
31:19:49.041 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40
31:19:58.648 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads.
31:20:05.289 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41
31:20:09.166 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41
31:20:46.445 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads.
31:20:53.078 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42
31:20:56.964 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42
31:21:08.251 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads.
31:21:14.581 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43
31:21:18.430 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43
31:21:45.278 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads.
31:21:51.798 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44
31:21:55.830 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44
31:22:05.757 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads.
31:22:12.529 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45
31:22:16.429 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45
31:22:48.622 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads.
31:22:55.363 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46
31:22:59.195 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46
31:23:08.839 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads.
31:23:15.490 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47
31:23:19.501 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47
31:23:31.357 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 457033 reads.
31:23:32.359 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48
31:23:32.929 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48
31:23:35.051 80G / 97G INFO General (hammer_tools.cpp : 233) Correcting pair of reads: /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_1.fastq and /DATA/markop/Pcitri_rnaspades_alldata/input/split_input/Edinburgh75_filtered_2.fastq
31:24:00.759 82G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 0 of 3200000 reads.
31:24:12.210 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 0
31:24:17.043 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 0
31:24:46.474 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 1 of 3200000 reads.
31:24:58.080 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 1
31:25:02.314 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 1
31:25:30.614 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 2 of 3200000 reads.
31:25:42.669 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 2
31:25:47.753 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 2
31:26:18.015 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 3 of 3200000 reads.
31:26:29.692 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 3
31:26:34.011 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 3
31:27:03.431 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 4 of 3200000 reads.
31:27:15.117 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 4
31:27:19.787 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 4
31:27:50.234 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 5 of 3200000 reads.
31:28:01.766 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 5
31:28:06.029 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 5
31:28:34.664 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 6 of 3200000 reads.
31:28:46.422 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 6
31:28:51.115 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 6
31:29:21.711 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 7 of 3200000 reads.
31:29:33.108 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 7
31:29:37.312 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 7
31:29:58.508 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 8 of 3200000 reads.
31:30:10.143 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 8
31:30:14.392 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 8
31:30:27.192 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 9 of 3200000 reads.
31:30:39.017 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 9
31:30:43.950 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 9
31:31:20.482 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 10 of 3200000 reads.
31:31:34.527 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 10
31:31:38.812 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 10
31:32:09.922 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 11 of 3200000 reads.
31:32:24.602 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 11
31:32:28.863 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 11
31:32:57.608 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 12 of 3200000 reads.
31:33:13.370 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 12
31:33:18.168 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 12
31:33:48.675 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 13 of 3200000 reads.
31:34:01.041 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 13
31:34:05.240 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 13
31:34:36.423 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 14 of 3200000 reads.
31:34:49.164 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 14
31:34:54.187 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 14
31:35:24.114 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 15 of 3200000 reads.
31:35:35.620 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 15
31:35:39.870 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 15
31:36:09.748 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 16 of 3200000 reads.
31:36:21.561 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 16
31:36:26.131 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 16
31:36:58.078 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 17 of 3200000 reads.
31:37:09.947 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 17
31:37:14.165 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 17
31:37:42.966 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 18 of 3200000 reads.
31:37:55.051 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 18
31:37:59.298 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 18
31:38:13.712 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 19 of 3200000 reads.
31:38:25.494 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 19
31:38:29.814 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 19
31:38:58.082 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 20 of 3200000 reads.
31:39:09.578 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 20
31:39:13.772 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 20
31:39:44.538 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 21 of 3200000 reads.
31:39:55.862 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 21
31:40:00.253 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 21
31:40:30.195 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 22 of 3200000 reads.
31:40:41.497 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 22
31:40:45.755 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 22
31:41:17.257 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 23 of 3200000 reads.
31:41:28.659 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 23
31:41:32.867 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 23
31:42:01.125 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 24 of 3200000 reads.
31:42:12.485 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 24
31:42:16.714 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 24
31:42:30.838 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 25 of 3200000 reads.
31:42:42.088 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 25
31:42:46.486 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 25
31:43:18.513 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 26 of 3200000 reads.
31:43:29.741 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 26
31:43:33.998 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 26
31:44:03.745 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 27 of 3200000 reads.
31:44:15.323 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 27
31:44:19.663 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 27
31:44:51.783 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 28 of 3200000 reads.
31:45:02.890 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 28
31:45:07.153 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 28
31:45:37.611 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 29 of 3200000 reads.
31:45:49.219 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 29
31:45:53.871 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 29
31:46:19.516 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 30 of 3200000 reads.
31:46:31.400 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 30
31:46:35.673 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 30
31:46:50.608 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 31 of 3200000 reads.
31:47:04.586 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 31
31:47:09.448 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 31
31:47:38.437 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 32 of 3200000 reads.
31:47:52.117 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 32
31:47:56.420 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 32
31:48:26.194 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 33 of 3200000 reads.
31:48:41.022 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 33
31:48:45.417 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 33
31:49:17.148 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 34 of 3200000 reads.
31:49:28.448 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 34
31:49:32.677 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 34
31:50:04.702 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 35 of 3200000 reads.
31:50:16.951 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 35
31:50:21.551 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 35
31:50:53.527 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 36 of 3200000 reads.
31:51:05.134 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 36
31:51:09.615 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 36
31:51:40.283 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 37 of 3200000 reads.
31:51:51.831 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 37
31:51:56.555 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 37
31:52:26.309 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 38 of 3200000 reads.
31:52:37.199 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 38
31:52:41.422 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 38
31:52:58.805 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 39 of 3200000 reads.
31:53:10.366 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 39
31:53:14.611 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 39
31:53:28.170 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 40 of 3200000 reads.
31:53:39.414 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 40
31:53:43.671 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 40
31:54:27.571 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 41 of 3200000 reads.
31:54:39.461 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 41
31:54:43.705 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 41
31:55:13.844 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 42 of 3200000 reads.
31:55:25.078 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 42
31:55:29.327 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 42
31:56:00.063 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 43 of 3200000 reads.
31:56:11.488 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 43
31:56:15.718 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 43
31:56:47.035 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 44 of 3200000 reads.
31:56:58.221 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 44
31:57:02.480 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 44
31:57:17.861 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 45 of 3200000 reads.
31:57:29.728 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 45
31:57:34.017 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 45
31:58:03.960 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 46 of 3200000 reads.
31:58:15.457 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 46
31:58:19.972 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 46
31:58:52.334 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 47 of 3200000 reads.
31:59:03.730 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 47
31:59:07.978 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 47
31:59:41.603 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 48 of 3200000 reads.
31:59:52.926 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 48
31:59:57.146 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 48
32:00:29.781 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 49 of 3200000 reads.
32:00:41.396 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 49
32:00:45.669 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 49
32:01:18.199 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 50 of 3200000 reads.
32:01:29.382 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 50
32:01:33.661 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 50
32:02:06.738 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 51 of 3200000 reads.
32:02:18.034 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 51
32:02:22.307 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 51
32:02:54.329 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 52 of 3200000 reads.
32:03:07.034 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 52
32:03:11.258 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 52
32:03:43.519 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 53 of 3200000 reads.
32:03:59.291 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 53
32:04:03.915 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 53
32:04:36.182 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 54 of 3200000 reads.
32:04:50.314 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 54
32:04:54.554 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 54
32:05:26.425 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 55 of 3200000 reads.
32:05:41.173 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 55
32:05:46.162 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 55
32:06:17.388 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 56 of 3200000 reads.
32:06:29.640 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 56
32:06:33.879 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 56
32:07:06.549 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 57 of 3200000 reads.
32:07:18.920 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 57
32:07:23.742 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 57
32:07:56.167 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 58 of 3200000 reads.
32:08:07.315 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 58
32:08:11.497 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 58
32:08:43.137 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 59 of 3200000 reads.
32:08:54.868 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 59
32:08:59.480 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 59
32:09:32.495 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 60 of 3200000 reads.
32:09:43.894 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 60
32:09:48.162 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 60
32:10:21.908 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 61 of 3200000 reads.
32:10:33.466 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 61
32:10:37.698 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 61
32:11:10.993 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 62 of 3200000 reads.
32:11:22.514 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 62
32:11:26.773 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 62
32:11:30.215 83G / 97G INFO General (hammer_tools.cpp : 168) Prepared batch 63 of 599692 reads.
32:11:32.565 83G / 97G INFO General (hammer_tools.cpp : 175) Processed batch 63
32:11:33.371 83G / 97G INFO General (hammer_tools.cpp : 185) Written batch 63
32:11:35.359 80G / 97G INFO General (hammer_tools.cpp : 274) Correction done. Changed 74689591 bases in 55263781 reads.
32:11:35.359 80G / 97G INFO General (hammer_tools.cpp : 275) Failed to correct 0 bases out of 135963462477.
32:11:43.933 128M / 97G INFO General (main.cpp : 255) Saving corrected dataset description to /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/corrected.yaml
32:11:43.939 128M / 97G INFO General (main.cpp : 262) All done. Exiting.
== Compressing corrected reads (with pigz)
== Dataset description file was created: /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/corrected.yaml
===== Read error correction finished.
* Corrected reads are in /DATA/markop/Pcitri_rnaspades_alldata/input/corrected/
======= SPAdes pipeline finished.
SPAdes log can be found here: /DATA/markop/Pcitri_rnaspades_alldata/input/spades.log
Thank you for using SPAdes!
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Created: 16th May 2022 at 11:58
Last updated: 6th Nov 2024 at 15:27
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Version 1 (earliest) Created 16th May 2022 at 11:58 by Marko Petek
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https://orcid.org/0000-0003-3644-7827PhD in Biotechnology, Research Associate at Department of Biotechnology and Systems Biology, National Institute of Biology
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National Institute of Biology, Department of Biotechnology and Systems Biology projects
Projects: HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, pISA-tree, MOA - Multiomics analysis of potato response to Potato virus Y (PVY) infection, SUSPHIRE - Sustainable Bioproduction of Pheromones for Insect Pest Control in Agriculture, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, _p_RNAinVAL, tst, tst2, Playground
Web page: http://www.nib.si/eng/index.php/departments/department-of-biotechnology-and-systems-biology
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SUSPHIRE aims to provide a sustainable, low-cost biomanufacturing platform for the commercial production of insect pheromones.
Synthetic biology data management spreadsheet: https://fairdomhub.org/data_files/6036
Programme: NIBSys
Public web page: http://susphire.info/susphireproject/
Start date: 1st Apr 2018
End date: 30th Sep 2021
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Short Name: T31_mealybug Title: Mealybug genome and transcriptome analyses Description: Searching for enzymes involved in the mealybug pheromone biosynthesis pathways. These pheromones are known to be released by virgin females. Phenodata: ./phenodata_20190523.txt Featuredata: Principal investigator: Heribert Warzecha, Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Studies: Investigation files, _S_P3_expressionEcoli, _S_P4_AdPathGenes, _S_P4_Pcitri_IsoSeq, _S_P4_Pcitri_genome, _S_P4_Pcitri_genome_extSamples, _S_P4_Pcitri_tr1, _S_P4_Pcitri_tr1tr2combo, _S_P4_Pcitri_tr2, _S_P4_cand_all, _S_P4_cand_genomic
Assays: _A_01-CoEXpNetViz_tr2-coexpr, _A_01_NGI-IsoSeq, _A_01_RNAseq-CLC, _A_01_assembly2-rnaSPAdes, _A_01_mapToGenomeAll-STAR, _A_01_renameFASTA-Bioinfo, _A_02-CoEXpNetViz_gen-coexpr, _A_02_CDHIT-Bioinfo, _A_02_assembly2-IPS, _A_02_cDNAcupcake-dry, _A_02_limma-R, _A_02_mapToGenomeAll_limma-R, _A_03-IPS, _A_03_CDHIT2-Bioinfo, _A_03_limma_min50counts-R, _A_03_mapAs2ToGenome-STAR, _A_04_limma_min10counts-R, _A_04_mapIllumina-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _A_05_DE_limma-R, _A_05_assembly1-rnaSPAdes, _A_06_assembly1-IPS, _A_07_mapAs1ToGenome-STAR, _A_08_mapReadsToAs1-STAR, _A_09_As1_tr_limmaDE-R, _A_C98F-EcoliExpr, _A_IDIsearch-Bioinfo, _A_IPS-bioinfo, _A_MAST-bioinfo, _A_MEME-bioinfo, _A_MSA-bioinfo, _A_MeUppS-EcoliExpr, _A_Node14610-EcoliExpr, _A_Node14610DmTP-EcoliExpr, _A_OtherMealybugCandidates-Alignment, _A_Pc1599-EcoliExpr, _A_Pc23180-EcoliExpr, _A_Pc2704-EcoliExpr, _A_Pc32607-EcoliExpr, _A_Pc7366II-EcoliExpr, _A_PcCis24-EcoliExpr, _A_Strep_CLDS-bioinfo, _A_TPS_phy-bioinfo, _A_Terzyme-bioinfo, _A_Trans1153-EcoliExpr, _A_Trans2-EcoliExpr, _A_Trans39-EcoliExpr, _A_Trans57-EcoliExpr, _A_Trans64-EcoliExpr, _A_Trans94-EcoliExpr, _A_candidatemining-bioinfo, _A_g14825_recon-bioinfo, _A_smallIDSsubunit-motifs, _I_T31_mealybug-files, _S_P3_expressionEcoli-files, _S_P4_AdPathGenes-files, _S_P4_Pcitri_IsoSeq-files, _S_P4_Pcitri_genome-files, _S_P4_Pcitri_genome_extSamples-files, _S_P4_Pcitri_tr1-files, _S_P4_Pcitri_tr1tr2combo-files, _S_P4_Pcitri_tr2-files, _S_P4_cand_all-files, _S_P4_cand_genomic-files
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Short Name: P4_Pcitri_tr2 Description: Study of P. citri transcriptome data from SUSPHIRE and mealybug.org RNA-Seq datasets Raw Data: Principal investigator: Špela Baebler License: Creative Commons Attribution 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Marko Petek
Investigation: _I_T31_mealybug
Assays: _A_01_assembly2-rnaSPAdes, _A_02_assembly2-IPS, _A_03_mapAs2ToGenome-STAR, _A_04_mapReadsToAs2-STAR, _A_05_As2_tr_limmaDE-R, _S_P4_Pcitri_tr2-files
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Short Name: 01_assembly2-rnaSPAdes Assay Class: DRY Assay Type: rnaSPAdes Title: P citri de-novo transcriptome assembly 2 Description: P citri de-novo transcriptome assembly using SUSPHIRE and mealybug.org RNA-seq datasets pISA Assay creation date: 2019-05-24 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20190523.txt Featuredata: Data:
Submitter: Marko Petek
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_T31_mealybug
Study: _S_P4_Pcitri_tr2
