BioDare_metadata Version 1
Original BioDare metadata, converted to json format
SEEK ID: https://fairdomhub.org/data_files/9465?version=1
Filename:
BioDare_metadata.json
Format: JSON document
Size: 125 KB
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"desc": {
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"id": "12730590368619",
"status": "finished",
"name": "1xFRD, 4xcFR, 4xDD",
"purpose": "testing clock response to Far Red light",
"description": "LUC imaging 12:12 Far Red into constant FR and DD",
"comments": "Not clear if regions are around 1 or 2 seedlings, considered only one seedling",
"provenance": {
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"author": "Laszlo Kozma-Bognar",
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"description": "Start at ZT1:09, a picture avery 2 hours"
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{
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{
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{
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{
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{
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{
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},
{
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},
{
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},
{
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},
{
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},
{
"sample_id": "115",
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},
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}
]
}
},
"pedro": {
"@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
"@xsi:schemaLocation": "/Z:/communal/DataDescription/models/aluc_model/model/luc_model.xsd",
"id": "12730590368619",
"status": "finished",
"name": "1xFRD, 4xcFR, 4xDD",
"purpose": "testing clock response to Far Red light",
"description": "LUC imaging 12:12 Far Red into constant FR and DD",
"comments": "Not clear if regions are around 1 or 2 seedlings, considered only one seedling",
"provenance": {
"site": "Edinburgh",
"author": "Laszlo Kozma-Bognar",
"start_date": "2006-10-15"
},
"growth_condition": {
"name": "FRD 12:12",
"medium": "Agar 1.5% MS 1 3% Sucrose",
"incubation": "4 days at 4C",
"growth_space": "Percival + LED",
"duration": "5",
"comment": "entrainment",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "infra red",
"intensity": "8",
"source": "LED",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
}
}
},
"experimental_condition": {
"name": "1xFRD, 4xcFR, 4xDD",
"medium": "Agar 1.5% MS 1 3% Sucrose",
"growth_space": "Percival + LED",
"duration": "9",
"comment": "1 day 12/12 far red, 4 days constant far red, 4 days constant dark",
"exp_time_zero": "24h",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "infra red",
"intensity": "8",
"source": "LED",
"light_complex_settings": {
"light_days": [
{
"start_day": "1",
"duration": "1",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
},
{
"start_day": "2",
"duration": "4",
"constant_light": {
"cycle_length": "24"
}
},
{
"start_day": "6",
"duration": "4",
"constant_dark": {
"cycle_length": "24"
}
}
]
}
}
}
},
"measurement": {
"technique": "Luciferase luminescence",
"equipment": "HAM 2",
"parameters": "imaging script starts 5 minutes before required ZT, then 55 minutes interval, 5 minutes light off, 30 minutes capture",
"description": "Start at ZT1:09, a picture avery 2 hours"
},
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"biblio": {
"principal": "Andrew Millar",
"institution": "University of Edinburgh",
"author": "Laszlo Kozma-Bognar",
"curator": "Benedicte Wenden"
}
}
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Views: 59 Downloads: 1
Created: 19th Jun 2026 at 13:08
Last updated: 19th Jun 2026 at 13:08
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Version History
Version 1 (earliest) Created 19th Jun 2026 at 13:08 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
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Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of experiments created by Kozma-Bognar Laszlo on the original BioDare and automatically transferred to FAIRDOM Hub.
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Unpublished
DOI: none
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1xFRD, 4xcFR, 4xDD
| Property | Value |
|---|---|
| BioDare ID | 12730590368619 |
| Author | Laszlo Kozma-Bognar |
| Institution | University of Edinburgh |
| License | CC_BY |
Description
LUC imaging 12:12 Far Red into constant FR and DD
Purpose
testing clock response to Far Red light
Comments
Not clear if regions are around 1 or 2 seedlings, considered only one seedling
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Kozma-Bognar Laszlo
Study: Unpublished
