Original BioDare metadata, converted to json format
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"id": "1647",
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"description": "12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)\n\nPartner experiment: 030714H1",
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"description": "Seedlings were treated on 6th day with Luciferin. They were then transferred Experimental conditions. Imaging was started on d7."
},
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"line": "unknown",
"provenance": "Robust stock"
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"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0008",
"provenance": "Robust stock"
},
"marker": "CCR2",
"growth_cond_name": "12L:12D +3% sucrose",
"experiment_cond_name": "12L12Dx4 LLx3 3%sucrose",
"ignored": "false",
"param": {
"@name": "TAG",
"@value": "Luc"
}
}
]
}
},
"pedro": {
"@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
"@xsi:schemaLocation": "/W:/communal/DataDescription/models/luc/model/newluc_model.xsd",
"id": "will be updated by the system",
"status": "in progress",
"name": "030714H2",
"purpose": "Double dawn experiment to compare to Mark Stitt's results",
"description": "12L:12D x4 LLx3. Light intensity is 90 umolm-2s-1 (red = 51 umolm-2s-1, blue = 32 umol-2s-1)\n\nPartner experiment: 030714H1",
"provenance": {
"site": "Edinburgh",
"author": "Yvette Wilson",
"start_date": "2014-07-02"
},
"growth_condition": [
{
"name": "12L:12D",
"medium": "Agar 1.2% MS 0.5",
"incubation": "7 days at 4C",
"growth_space": "Percival",
"duration": "6",
"comment": "Plants were entrained at light intensity 90 umolm-2s-1 to correspond to the light intensity of the experiment.",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "90",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
}
}
},
{
"name": "12L:12D +3% sucrose",
"medium": "Agar 1.2% MS 0.5 3% Sucrose",
"incubation": "7 days at 4C",
"growth_space": "Percival",
"duration": "6",
"comment": "Plants were entrained at light intensity 90 umolm-2s-1 to correspond to the light intensity of the experiment.",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": {
"spectrum": "white",
"intensity": "90",
"source": "tube",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
}
}
}
],
"experimental_condition": [
{
"name": "12L:12Dx4 LLx3",
"medium": "Agar 1.2% MS 0.5",
"growth_space": "Percival + LED",
"duration": "7",
"comment": "The plates were exposed to dim light (lab lights) on the start of experimental day 1 and were transferred to experimental conditions at ZT3.",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": [
{
"spectrum": "blue",
"intensity": "32",
"source": "tube",
"light_complex_settings": {
"light_days": [
{
"start_day": "1",
"duration": "4",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
},
{
"start_day": "5",
"duration": "3",
"constant_light": {
"cycle_length": "24"
}
}
]
}
},
{
"spectrum": "red",
"intensity": "51",
"source": "LED",
"light_complex_settings": {
"light_days": [
{
"start_day": "1",
"duration": "4",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
},
{
"start_day": "5",
"duration": "3",
"constant_light": {
"cycle_length": "24"
}
}
]
}
}
]
}
},
{
"name": "12L12Dx4 LLx3 3%sucrose",
"medium": "Agar 1.2% MS 0.5;Agar 1.2% MS 0.5 3% Sucrose",
"growth_space": "Percival + LED",
"duration": "7",
"comment": "The plates were exposed to dim light (lab lights) on the start of experimental day 1 and were transferred to experimental conditions at ZT3",
"temperature_conditions": {
"constant_temp": {
"cycle_length": "24",
"base_temp": "22"
}
},
"light_conditions": {
"light_channel": [
{
"spectrum": "blue",
"intensity": "32",
"source": "LED",
"light_complex_settings": {
"light_days": [
{
"start_day": "1",
"duration": "4",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
},
{
"start_day": "5",
"duration": "3",
"constant_light": {
"cycle_length": "24"
}
}
]
}
},
{
"spectrum": "red",
"intensity": "51",
"source": "LED",
"light_complex_settings": {
"light_days": [
{
"start_day": "1",
"duration": "4",
"diurnal_light": {
"cycle_length": "24",
"start_time": "0",
"duration": "12"
}
},
{
"start_day": "5",
"duration": "3",
"constant_light": {
"cycle_length": "24"
}
}
]
}
}
]
}
}
],
"measurement": {
"technique": "Luciferase luminescence",
"equipment": "HAM 2",
"parameters": "Imaging script started 5 minutes before ZT0\n55mins wait, 5mins lights off, 30mins capture",
"description": "Seedlings were treated on 6th day with Luciferin. They were then transferred Experimental conditions. Imaging was started on d7."
},
"sample_preparation": {
"method": "Plants sprayed with luciferin on day 6 of growth conditions and transferred to experimental conditions. Imaging was started on day 7."
},
"samples": {
"sample": [
{
"sample_id": "1",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Img Background",
"provenance": "Robust stock"
},
"marker": "Actin",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "2",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "3",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "4",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "5",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "6",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "7",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "8",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "9",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "10",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "11",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "12",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0007",
"provenance": "Robust stock"
},
"marker": "CCA1",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "13",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "14",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "15",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "16",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "17",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "18",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "19",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "20",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "21",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "22",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Wasilewski (WS)",
"genotype": "Wild Type",
"line": "M0011",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "23",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "24",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "25",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "26",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "27",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "28",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "29",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "30",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "31",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
"genetic_info": {
"species": "Arabidopsis thaliana",
"background": "Columbia (Col)",
"genotype": "Wild Type",
"line": "G0127",
"provenance": "Robust stock"
},
"marker": "LHY",
"growth_cond_name": "12L:12D",
"experiment_cond_name": "12L:12Dx4 LLx3",
"param": {
"@name": "TAG",
"@value": "Luc"
}
},
{
"sample_id": "32",
"sample_type": "seedling",
"origin": "seedling",
"growth_stage": "seedling",
"age": "7",
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},
"biblio": {}
}
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Yvette Wilson
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Created: 18th Jun 2026 at 14:30
Last updated: 18th Jun 2026 at 14:30
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Version 1 (earliest) Created 18th Jun 2026 at 14:30 by Daniel Thedie
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