ExploreList of samples used in the assay (extracted from original BioDare metadata and converted to csv)
SEEK ID: https://fairdomhub.org/data_files/8659?version=1
Filename:
Sample_list.csv
Format: Comma-separated values document
Size: 16.9 KB
sample_id,sample_type,origin,growth_stage,marker,growth_cond_name,experiment_cond_name,ignored,genetic_info.species,genetic_info.background,genetic_info.genotype,genetic_info.line 1,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 2,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 3,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 4,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 5,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 6,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 7,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 8,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 9,seedling,seedling,mid rosette,LHY,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 10,seedling,seedling,mid rosette,LHY,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 11,seedling,seedling,mid rosette,CCA1,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 12,seedling,seedling,mid rosette,CCA1,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 13,seedling,seedling,mid rosette,PRR9,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 14,seedling,seedling,mid rosette,PRR9,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 15,seedling,seedling,mid rosette,PRR7,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 16,seedling,seedling,mid rosette,PRR7,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 17,seedling,seedling,mid rosette,PRR5,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 18,seedling,seedling,mid rosette,PRR5,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 19,seedling,seedling,mid rosette,TOC1,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 20,seedling,seedling,mid rosette,TOC1,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 21,seedling,seedling,mid rosette,LUX,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 22,seedling,seedling,mid rosette,LUX,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 23,seedling,seedling,mid rosette,GI,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 24,seedling,seedling,mid rosette,GI,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 25,seedling,seedling,mid rosette,ELF3,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 26,seedling,seedling,mid rosette,ELF3,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 27,seedling,seedling,mid rosette,ELF4,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 28,seedling,seedling,mid rosette,ELF4,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 29,seedling,seedling,mid rosette,PIF4,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 30,seedling,seedling,mid rosette,PIF4,No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 31,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 32,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,6L:18D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 33,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 34,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 35,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 36,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 37,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 38,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 39,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 40,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 41,seedling,seedling,mid rosette,LHY,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 42,seedling,seedling,mid rosette,LHY,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 43,seedling,seedling,mid rosette,CCA1,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 44,seedling,seedling,mid rosette,CCA1,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 45,seedling,seedling,mid rosette,PRR9,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 46,seedling,seedling,mid rosette,PRR9,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 47,seedling,seedling,mid rosette,PRR7,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 48,seedling,seedling,mid rosette,PRR7,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 49,seedling,seedling,mid rosette,PRR5,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 50,seedling,seedling,mid rosette,PRR5,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 51,seedling,seedling,mid rosette,TOC1,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 52,seedling,seedling,mid rosette,TOC1,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 53,seedling,seedling,mid rosette,LUX,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 54,seedling,seedling,mid rosette,LUX,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 55,seedling,seedling,mid rosette,GI,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 56,seedling,seedling,mid rosette,GI,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 57,seedling,seedling,mid rosette,ELF3,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 58,seedling,seedling,mid rosette,ELF3,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 59,seedling,seedling,mid rosette,ELF4,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 60,seedling,seedling,mid rosette,ELF4,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 61,seedling,seedling,mid rosette,PIF4,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 62,seedling,seedling,mid rosette,PIF4,No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 63,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 64,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,8L:16D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 65,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 66,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 67,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 68,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 69,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 70,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 71,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 72,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 73,seedling,seedling,mid rosette,LHY,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 74,seedling,seedling,mid rosette,LHY,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 75,seedling,seedling,mid rosette,CCA1,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 76,seedling,seedling,mid rosette,CCA1,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 77,seedling,seedling,mid rosette,PRR9,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 78,seedling,seedling,mid rosette,PRR9,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 79,seedling,seedling,mid rosette,PRR7,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 80,seedling,seedling,mid rosette,PRR7,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 81,seedling,seedling,mid rosette,PRR5,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 82,seedling,seedling,mid rosette,PRR5,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 83,seedling,seedling,mid rosette,TOC1,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 84,seedling,seedling,mid rosette,TOC1,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 85,seedling,seedling,mid rosette,LUX,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 86,seedling,seedling,mid rosette,LUX,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 87,seedling,seedling,mid rosette,GI,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 88,seedling,seedling,mid rosette,GI,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 89,seedling,seedling,mid rosette,ELF3,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 90,seedling,seedling,mid rosette,ELF3,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 91,seedling,seedling,mid rosette,ELF4,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 92,seedling,seedling,mid rosette,ELF4,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 93,seedling,seedling,mid rosette,PIF4,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 94,seedling,seedling,mid rosette,PIF4,No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 95,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 96,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,12L:12D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 97,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 98,seedling,seedling,mid rosette,ACT2 155,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 99,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 100,seedling,seedling,mid rosette,ACT2 633,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 101,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 102,seedling,seedling,mid rosette,GAPDH3',No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 103,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 104,seedling,seedling,mid rosette,GAPDH5',No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 105,seedling,seedling,mid rosette,LHY,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 106,seedling,seedling,mid rosette,LHY,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 107,seedling,seedling,mid rosette,CCA1,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 108,seedling,seedling,mid rosette,CCA1,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 109,seedling,seedling,mid rosette,PRR9,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 110,seedling,seedling,mid rosette,PRR9,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 111,seedling,seedling,mid rosette,PRR7,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 112,seedling,seedling,mid rosette,PRR7,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 113,seedling,seedling,mid rosette,PRR5,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 114,seedling,seedling,mid rosette,PRR5,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 115,seedling,seedling,mid rosette,TOC1,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 116,seedling,seedling,mid rosette,TOC1,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 117,seedling,seedling,mid rosette,LUX,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 118,seedling,seedling,mid rosette,LUX,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 119,seedling,seedling,mid rosette,GI,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 120,seedling,seedling,mid rosette,GI,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 121,seedling,seedling,mid rosette,ELF3,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 122,seedling,seedling,mid rosette,ELF3,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 123,seedling,seedling,mid rosette,ELF4,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 124,seedling,seedling,mid rosette,ELF4,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 125,seedling,seedling,mid rosette,PIF4,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 126,seedling,seedling,mid rosette,PIF4,No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 127,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty 128,seedling,seedling,mid rosette,PIF5(PIL6),No separate growth condition,18L:6D,false,Arabidopsis thaliana,Columbia (Col),Wild Type,empty
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Created: 18th Jun 2026 at 12:50
Last updated: 18th Jun 2026 at 12:50
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Version 1 (earliest) Created 18th Jun 2026 at 12:50 by Daniel Thedie
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https://orcid.org/0000-0002-1352-7245Research Software Engineer in the Biological Research Data Management team (BioRDM) at the University of Edinburgh.
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The Centre for Engineering Biology is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2023 as the successor to SynthSys, itself founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE). CSBE was newly founded in 2007. The Centre for Engineering Biology is a hub organisation that links across multiple, major funding awards, including an Engineering Biology Mission Hub, and EPSRC C-loop.
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository, BioDare1
Web page: https://biology.ed.ac.uk/centre-engineering-biology
Advanced Projects list for this Data file with search and filtering
Experiment data previously hosted on the original version of BioDare (biodare.ed.ac.uk).
Programme: Centre for Engineering Biology (prev. SynthSys)
Public web page: Not specified
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Collection of experiments created by Flis Anna on the original BioDare and automatically transferred to FAIRDOM Hub.
Submitter: Daniel Thedie
Studies: Flis et al. (2015), Flis et al. (2016), Unpublished
Assays: Clock gene RNAs under RD-RR in clock mutants, expt 1, Clock gene RNAs under RD-RR in clock mutants, expt 2, Clock gene RNAs under RD-RR in clock mutants, expt 3, Clock gene RNAs under RD-RR in clock mutants, expt 4, Flis et al. TiMet clock gene comparison across photoperiods, McWatters A.t. Col-0 WT clock RNA timeseries, Q-PCR LD (12:12) 17C CAB2, Q-PCR LD (12:12) 17C CCA1, Q-PCR LD (12:12) 17C ELF3, Q-PCR LD (12:12) 17C ELF4, Q-PCR LD (12:12) 17C GI, Q-PCR LD (12:12) 17C LHY, Q-PCR LD (12:12) 17C LUX, Q-PCR LD (12:12) 17C PRR5, Q-PCR LD (12:12) 17C PRR7, Q-PCR LD (12:12) 17C PRR9, Q-PCR LD (12:12) 17C TOC1, TiMet WP1.1 WS seedling vs rosette, TiMet WP1.1 qRT-PCR LD to LL and LD, TiMet WP1.1 qRT-PCR elf3 LD
Advanced Studies list for this Data file with search and filtering
Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis
Flis et al. (2016)
DOI: 10.1111/pce.12754
Submitter: Daniel Thedie
Investigation: Flis Anna
Assays: Flis et al. TiMet clock gene comparison across photoperiods
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Flis et al. TiMet clock gene comparison across photoperiods
| Property | Value |
|---|---|
| BioDare ID | 3967 |
| Author | Anna Flis |
| Institution | Max Planck Inst. Golm |
| License | CC_BY |
Description
Literature data from: 'Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis' by: Anna Flis.
Col plants were grown in soil under 6, 8, 12 and 18h photoperiod for 21 days, and ...
Submitter: Daniel Thedie
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Flis Anna
Study: Flis et al. (2016)
